Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ECRM13514_RS24110 Genome accession   NZ_CP006027
Coordinates   4703703..4704695 (+) Length   330 a.a.
NCBI ID   WP_072145504.1    Uniprot ID   -
Organism   Escherichia coli O145:H28 str. RM13514     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4698703..4709695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECRM13514_RS24085 (ECRM13514_4810) rbsD 4698827..4699246 (+) 420 WP_000715936.1 D-ribose pyranase -
  ECRM13514_RS24090 (ECRM13514_4811) rbsA 4699254..4700759 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  ECRM13514_RS24095 (ECRM13514_4812) rbsC 4700764..4701729 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  ECRM13514_RS24100 (ECRM13514_4813) rbsB 4701754..4702644 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ECRM13514_RS24105 (ECRM13514_4814) rbsK 4702770..4703699 (+) 930 WP_024221644.1 ribokinase -
  ECRM13514_RS24110 (ECRM13514_4815) cytR 4703703..4704695 (+) 993 WP_072145504.1 ribose operon transcriptional repressor RbsR Regulator
  ECRM13514_RS24115 (ECRM13514_4816) mdtD 4704673..4706088 (-) 1416 WP_001280851.1 multidrug transporter subunit MdtD -
  ECRM13514_RS24120 (ECRM13514_4817) yieP 4706111..4706803 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36596.93 Da        Isoelectric Point: 5.2141

>NTDB_id=100080 ECRM13514_RS24110 WP_072145504.1 4703703..4704695(+) (cytR) [Escherichia coli O145:H28 str. RM13514]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPL
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=100080 ECRM13514_RS24110 WP_072145504.1 4703703..4704695(+) (cytR) [Escherichia coli O145:H28 str. RM13514]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACTAATCCTTTCTATTCAGAACTGGTGCGCGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAGCGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCTG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTTATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment