Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABFU48_RS05960 Genome accession   NZ_CP155976
Coordinates   1421952..1422353 (+) Length   133 a.a.
NCBI ID   WP_011038048.1    Uniprot ID   Q8P6P2
Organism   Xanthomonas campestris pv. raphani strain 0516     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1416952..1427353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU48_RS05940 (ABFU48_05925) tsaB 1418046..1418765 (+) 720 WP_014508577.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  ABFU48_RS05945 (ABFU48_05930) - 1418765..1419688 (+) 924 WP_274341756.1 ADP-ribosylglycohydrolase family protein -
  ABFU48_RS05950 (ABFU48_05935) - 1419892..1420767 (-) 876 WP_014508572.1 energy transducer TonB -
  ABFU48_RS05955 (ABFU48_05940) gshB 1420764..1421714 (-) 951 WP_050912098.1 glutathione synthase -
  ABFU48_RS05960 (ABFU48_05945) pilG 1421952..1422353 (+) 402 WP_011038048.1 twitching motility response regulator PilG Regulator
  ABFU48_RS05965 (ABFU48_05950) - 1422371..1422733 (+) 363 WP_011038047.1 PleD family two-component system response regulator -
  ABFU48_RS05970 (ABFU48_05955) - 1422733..1423263 (+) 531 WP_014508568.1 chemotaxis protein CheW -
  ABFU48_RS05975 (ABFU48_05960) - 1423303..1425339 (+) 2037 WP_011038045.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14676.05 Da        Isoelectric Point: 6.3482

>NTDB_id=1000585 ABFU48_RS05960 WP_011038048.1 1421952..1422353(+) (pilG) [Xanthomonas campestris pv. raphani strain 0516]
MTENMAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVNA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=1000585 ABFU48_RS05960 WP_011038048.1 1421952..1422353(+) (pilG) [Xanthomonas campestris pv. raphani strain 0516]
ATGACTGAAAACATGGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTTATCGATGATTCGAAGACCATTCGCCG
CACTGCCGAAACGCTGCTCAAGCGCGAAGGCTGTGAAGTGGTGACAGCGACGGACGGATTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTCGTGGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAGTCGACGCCGGTGATCATGTTGTCTTCCAAGGATGGCCTGTTTGACAAGGCACGCGGCCGCAT
CGTCGGCTCCGAGCAATATCTGACCAAGCCATTCACCCGTGAAGAACTACTGAGCGCGATCCGTACGTACGTCAACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8P6P2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684

Multiple sequence alignment