Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ABFU02_RS05250 | Genome accession | NZ_CP155974 |
| Coordinates | 1257207..1258460 (-) | Length | 417 a.a. |
| NCBI ID | WP_225042505.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. raphani strain 0915 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1252207..1263460
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFU02_RS05230 (ABFU02_05220) | - | 1253146..1253823 (+) | 678 | WP_003490678.1 | response regulator transcription factor | - |
| ABFU02_RS05235 (ABFU02_05225) | - | 1253816..1255150 (+) | 1335 | WP_019237347.1 | HAMP domain-containing sensor histidine kinase | - |
| ABFU02_RS05240 (ABFU02_05235) | coaE | 1255700..1256323 (-) | 624 | WP_228876559.1 | dephospho-CoA kinase | - |
| ABFU02_RS05245 (ABFU02_05240) | - | 1256337..1257200 (-) | 864 | WP_228876553.1 | A24 family peptidase | - |
| ABFU02_RS05250 (ABFU02_05245) | pilC | 1257207..1258460 (-) | 1254 | WP_225042505.1 | type II secretion system F family protein | Machinery gene |
| ABFU02_RS05255 (ABFU02_05250) | pilA2 | 1258772..1259221 (+) | 450 | WP_225042506.1 | pilin | Machinery gene |
| ABFU02_RS05260 (ABFU02_05255) | pilB | 1259378..1261111 (+) | 1734 | WP_228957556.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABFU02_RS05265 (ABFU02_05260) | pilR | 1261528..1262922 (-) | 1395 | WP_228957555.1 | sigma-54 dependent transcriptional regulator | Regulator |
Sequence
Protein
Download Length: 417 a.a. Molecular weight: 45554.80 Da Isoelectric Point: 10.3670
>NTDB_id=1000545 ABFU02_RS05250 WP_225042505.1 1257207..1258460(-) (pilC) [Xanthomonas campestris pv. raphani strain 0915]
MTAARSTLNKQNSGISAQQFFVWEGTDKRGIKMKGEQSARNVNMLRAELRRQGISPSVVKPKPKPLFGAAGKKITPKDIA
FFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQVRTDIEGGSSLHEAISRHPVQFDELYRNLVRAGEGAGVLETV
LDTIASYKENIEALKGKIRKALFYPAMVVAVALIVSAILLIFVVPQFEQVFKSFGAELPAFTQMIVAASRFMVSYWWIVL
FAVGGTIAGFVFSYKRSPRMQHGMDRLILKIPVIGTIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEEAV
LRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTVVGG
MVIGMYLPIFKLGAVVG
MTAARSTLNKQNSGISAQQFFVWEGTDKRGIKMKGEQSARNVNMLRAELRRQGISPSVVKPKPKPLFGAAGKKITPKDIA
FFSRQMATMMKSGVPIVGALEIIGEGHKNPRMKKMVGQVRTDIEGGSSLHEAISRHPVQFDELYRNLVRAGEGAGVLETV
LDTIASYKENIEALKGKIRKALFYPAMVVAVALIVSAILLIFVVPQFEQVFKSFGAELPAFTQMIVAASRFMVSYWWIVL
FAVGGTIAGFVFSYKRSPRMQHGMDRLILKIPVIGTIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEEAV
LRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTVVGG
MVIGMYLPIFKLGAVVG
Nucleotide
Download Length: 1254 bp
>NTDB_id=1000545 ABFU02_RS05250 WP_225042505.1 1257207..1258460(-) (pilC) [Xanthomonas campestris pv. raphani strain 0915]
ATGACAGCCGCACGCAGCACCCTTAATAAGCAGAATTCAGGGATCAGCGCCCAGCAGTTTTTTGTGTGGGAGGGCACCGA
TAAACGCGGCATCAAGATGAAAGGCGAGCAGTCTGCTCGCAATGTGAACATGCTTCGCGCTGAACTACGCAGACAGGGCA
TATCACCTAGCGTAGTGAAGCCCAAGCCAAAGCCGTTATTTGGAGCTGCAGGCAAAAAGATCACGCCGAAGGACATTGCA
TTCTTCAGCCGCCAAATGGCAACAATGATGAAGTCTGGCGTGCCCATTGTAGGCGCCCTAGAAATTATCGGCGAGGGACA
TAAAAACCCTCGCATGAAAAAAATGGTGGGACAGGTTCGAACAGATATCGAAGGCGGTTCGTCCCTACATGAAGCCATCA
GTAGGCATCCAGTTCAGTTTGACGAGTTGTATCGCAATTTGGTCCGCGCGGGCGAGGGCGCTGGTGTTTTAGAGACGGTA
TTGGACACCATTGCTTCTTATAAAGAAAATATTGAAGCACTCAAAGGCAAGATCAGGAAAGCCCTATTCTATCCTGCAAT
GGTCGTAGCAGTGGCGTTGATAGTTAGCGCCATTCTACTCATTTTTGTTGTTCCGCAATTCGAGCAAGTTTTTAAGAGTT
TTGGTGCAGAACTCCCGGCTTTTACCCAGATGATAGTGGCTGCATCGCGATTCATGGTGAGCTACTGGTGGATTGTGCTT
TTCGCAGTCGGCGGCACAATCGCTGGCTTTGTATTTTCTTATAAACGATCACCTCGTATGCAACACGGTATGGACCGCTT
GATTTTGAAGATCCCTGTGATCGGCACAATCATGCATAACAGTTCAATTGCACGCTTTGCTCGAACTACGGCAGTTACTT
TTAAGGCTGGCGTCCCCCTTGTTGAAGCACTAGGAATTGTCGCTGGGGCCACAGGCAATAAACTATACGAAGAAGCAGTG
TTACGAATGCGCGACGACGTCTCAGTTGGCTACCCAGTCAATATGGCAATGAAACAAGTAAATTTGTTTCCTCACATGGT
CATCCAAATGACCGCAATCGGTGAAGAAGCTGGCGCATTAGATGCAATGCTTTTTAAAGTTGCAGAATATTTCGAACAAG
AAGTTAACAATGCAGTCGATGCACTTAGCAGTCTATTGGAACCTATGATTATGGTGTTCATTGGTACAGTAGTAGGCGGC
ATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
ATGACAGCCGCACGCAGCACCCTTAATAAGCAGAATTCAGGGATCAGCGCCCAGCAGTTTTTTGTGTGGGAGGGCACCGA
TAAACGCGGCATCAAGATGAAAGGCGAGCAGTCTGCTCGCAATGTGAACATGCTTCGCGCTGAACTACGCAGACAGGGCA
TATCACCTAGCGTAGTGAAGCCCAAGCCAAAGCCGTTATTTGGAGCTGCAGGCAAAAAGATCACGCCGAAGGACATTGCA
TTCTTCAGCCGCCAAATGGCAACAATGATGAAGTCTGGCGTGCCCATTGTAGGCGCCCTAGAAATTATCGGCGAGGGACA
TAAAAACCCTCGCATGAAAAAAATGGTGGGACAGGTTCGAACAGATATCGAAGGCGGTTCGTCCCTACATGAAGCCATCA
GTAGGCATCCAGTTCAGTTTGACGAGTTGTATCGCAATTTGGTCCGCGCGGGCGAGGGCGCTGGTGTTTTAGAGACGGTA
TTGGACACCATTGCTTCTTATAAAGAAAATATTGAAGCACTCAAAGGCAAGATCAGGAAAGCCCTATTCTATCCTGCAAT
GGTCGTAGCAGTGGCGTTGATAGTTAGCGCCATTCTACTCATTTTTGTTGTTCCGCAATTCGAGCAAGTTTTTAAGAGTT
TTGGTGCAGAACTCCCGGCTTTTACCCAGATGATAGTGGCTGCATCGCGATTCATGGTGAGCTACTGGTGGATTGTGCTT
TTCGCAGTCGGCGGCACAATCGCTGGCTTTGTATTTTCTTATAAACGATCACCTCGTATGCAACACGGTATGGACCGCTT
GATTTTGAAGATCCCTGTGATCGGCACAATCATGCATAACAGTTCAATTGCACGCTTTGCTCGAACTACGGCAGTTACTT
TTAAGGCTGGCGTCCCCCTTGTTGAAGCACTAGGAATTGTCGCTGGGGCCACAGGCAATAAACTATACGAAGAAGCAGTG
TTACGAATGCGCGACGACGTCTCAGTTGGCTACCCAGTCAATATGGCAATGAAACAAGTAAATTTGTTTCCTCACATGGT
CATCCAAATGACCGCAATCGGTGAAGAAGCTGGCGCATTAGATGCAATGCTTTTTAAAGTTGCAGAATATTTCGAACAAG
AAGTTAACAATGCAGTCGATGCACTTAGCAGTCTATTGGAACCTATGATTATGGTGTTCATTGGTACAGTAGTAGGCGGC
ATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
52.778 |
94.964 |
0.501 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.525 |
94.964 |
0.499 |
| pilC | Acinetobacter baylyi ADP1 |
51.134 |
95.204 |
0.487 |
| pilC | Acinetobacter baumannii D1279779 |
50.126 |
95.204 |
0.477 |
| pilG | Neisseria gonorrhoeae MS11 |
44.31 |
99.041 |
0.439 |
| pilG | Neisseria meningitidis 44/76-A |
43.826 |
99.041 |
0.434 |
| pilC | Vibrio cholerae strain A1552 |
41.562 |
95.204 |
0.396 |
| pilC | Vibrio campbellii strain DS40M4 |
40.602 |
95.683 |
0.388 |