Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QUE10_RS05190 Genome accession   NZ_AP027217
Coordinates   1114858..1115487 (+) Length   209 a.a.
NCBI ID   WP_000839142.1    Uniprot ID   A0A8S7T410
Organism   Escherichia coli strain JNE170426     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1109858..1120487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE10_RS05170 (JNE170426_09890) ycbZ 1110259..1112019 (-) 1761 WP_000156526.1 Lon protease family protein -
  QUE10_RS05175 (JNE170426_09900) matP 1112205..1112657 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QUE10_RS05180 (JNE170426_09910) ompA 1112733..1113773 (-) 1041 WP_000750416.1 porin OmpA -
  QUE10_RS05185 (JNE170426_09930) sulA 1114130..1114639 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QUE10_RS05190 (JNE170426_09940) sxy/tfoX 1114858..1115487 (+) 630 WP_000839142.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QUE10_RS05195 (JNE170426_09950) yccS 1115450..1117612 (-) 2163 WP_000875023.1 YccS family putative transporter -
  QUE10_RS05200 (JNE170426_09960) yccF 1117622..1118068 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QUE10_RS05205 (JNE170426_09970) helD 1118191..1120245 (+) 2055 WP_001349949.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=100054 QUE10_RS05190 WP_000839142.1 1114858..1115487(+) (sxy/tfoX) [Escherichia coli strain JNE170426]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVCLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=100054 QUE10_RS05190 WP_000839142.1 1114858..1115487(+) (sxy/tfoX) [Escherichia coli strain JNE170426]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGTGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment