Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABFT98_RS06185 Genome accession   NZ_CP155973
Coordinates   1468922..1469323 (+) Length   133 a.a.
NCBI ID   WP_011038048.1    Uniprot ID   Q8P6P2
Organism   Xanthomonas campestris pv. raphani strain bglFP 6789     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1463922..1474323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT98_RS06165 (ABFT98_06145) tsaB 1465002..1465721 (+) 720 WP_115540771.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  ABFT98_RS06170 (ABFT98_06150) - 1465721..1466644 (+) 924 WP_228944932.1 ADP-ribosylglycohydrolase family protein -
  ABFT98_RS06175 (ABFT98_06155) - 1466862..1467737 (-) 876 WP_115577462.1 energy transducer TonB -
  ABFT98_RS06180 (ABFT98_06160) gshB 1467734..1468684 (-) 951 WP_228431948.1 glutathione synthase -
  ABFT98_RS06185 (ABFT98_06165) pilG 1468922..1469323 (+) 402 WP_011038048.1 twitching motility response regulator PilG Regulator
  ABFT98_RS06190 (ABFT98_06170) - 1469341..1469703 (+) 363 WP_011038047.1 PleD family two-component system response regulator -
  ABFT98_RS06195 (ABFT98_06175) - 1469703..1470233 (+) 531 WP_014508568.1 chemotaxis protein CheW -
  ABFT98_RS06200 (ABFT98_06180) - 1470273..1472309 (+) 2037 WP_011038045.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14676.05 Da        Isoelectric Point: 6.3482

>NTDB_id=1000532 ABFT98_RS06185 WP_011038048.1 1468922..1469323(+) (pilG) [Xanthomonas campestris pv. raphani strain bglFP 6789]
MTENMAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVNA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=1000532 ABFT98_RS06185 WP_011038048.1 1468922..1469323(+) (pilG) [Xanthomonas campestris pv. raphani strain bglFP 6789]
ATGACTGAAAACATGGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTTATCGATGATTCGAAGACCATTCGCCG
CACTGCTGAAACGCTGCTCAAGCGCGAAGGCTGTGAAGTGGTGACAGCGACGGACGGATTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTCGTGGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAGTCGACGCCGGTGATCATGTTGTCGTCCAAGGATGGCCTGTTTGACAAGGCACGCGGCCGCAT
CGTCGGCTCCGAGCAATATCTGACCAAGCCATTCACCCGTGAAGAACTACTGAGCGCGATCCGTACGTACGTCAACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8P6P2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684

Multiple sequence alignment