Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   EL096_RS00355 Genome accession   NZ_LR134294
Coordinates   66325..66591 (+) Length   88 a.a.
NCBI ID   WP_050072227.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC12977     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 61325..71591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL096_RS00335 (NCTC12977_00068) - 61589..62098 (+) 510 WP_000619939.1 GNAT family N-acetyltransferase -
  EL096_RS00340 (NCTC12977_00069) pheT 62175..64580 (+) 2406 WP_050072972.1 phenylalanine--tRNA ligase subunit beta -
  EL096_RS00345 (NCTC12977_00070) - 64648..65649 (-) 1002 WP_050072975.1 endonuclease/exonuclease/phosphatase family protein -
  EL096_RS00350 - 65797..66200 (+) 404 Protein_67 helix-turn-helix domain-containing protein -
  EL096_RS00355 (NCTC12977_00072) HI0659 66325..66591 (+) 267 WP_050072227.1 helix-turn-helix domain-containing protein Machinery gene
  EL096_RS00360 (NCTC12977_00073) metE 66852..69101 (+) 2250 WP_050072228.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  EL096_RS00365 (NCTC12977_00074) metF 69165..70031 (+) 867 WP_000089979.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9592.07 Da        Isoelectric Point: 4.4893

>NTDB_id=1000484 EL096_RS00355 WP_050072227.1 66325..66591(+) (HI0659) [Streptococcus pneumoniae strain NCTC12977]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARTETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=1000484 EL096_RS00355 WP_050072227.1 66325..66591(+) (HI0659) [Streptococcus pneumoniae strain NCTC12977]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGACGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534