Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ABFU38_RS06170 Genome accession   NZ_CP155967
Coordinates   1471401..1471802 (+) Length   133 a.a.
NCBI ID   WP_011038048.1    Uniprot ID   Q8P6P2
Organism   Xanthomonas campestris pv. raphani strain BXC#141     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1466401..1476802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU38_RS06150 (ABFU38_06145) tsaB 1467482..1468201 (+) 720 WP_407469306.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  ABFU38_RS06155 (ABFU38_06150) - 1468201..1469124 (+) 924 WP_012437701.1 ADP-ribosylglycohydrolase family protein -
  ABFU38_RS06160 (ABFU38_06155) - 1469341..1470216 (-) 876 WP_407469307.1 energy transducer TonB -
  ABFU38_RS06165 (ABFU38_06160) gshB 1470213..1471163 (-) 951 WP_014508571.1 glutathione synthase -
  ABFU38_RS06170 (ABFU38_06165) pilG 1471401..1471802 (+) 402 WP_011038048.1 twitching motility response regulator PilG Regulator
  ABFU38_RS06175 (ABFU38_06170) - 1471820..1472182 (+) 363 WP_011038047.1 PleD family two-component system response regulator -
  ABFU38_RS06180 (ABFU38_06175) - 1472182..1472712 (+) 531 WP_014508568.1 chemotaxis protein CheW -
  ABFU38_RS06185 (ABFU38_06180) - 1472752..1474788 (+) 2037 WP_011038045.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14676.05 Da        Isoelectric Point: 6.3482

>NTDB_id=1000428 ABFU38_RS06170 WP_011038048.1 1471401..1471802(+) (pilG) [Xanthomonas campestris pv. raphani strain BXC#141]
MTENMAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVNA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=1000428 ABFU38_RS06170 WP_011038048.1 1471401..1471802(+) (pilG) [Xanthomonas campestris pv. raphani strain BXC#141]
ATGACTGAAAACATGGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTTATCGATGATTCGAAGACCATTCGCCG
CACTGCCGAAACGCTGCTCAAGCGCGAAGGCTGTGAAGTGGTGACAGCGACGGACGGATTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTCGTGGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAGTCGACGCCGGTGATCATGTTGTCTTCCAAGGATGGCCTGTTTGACAAGGCACGCGGCCGCAT
CGTCGGCTCCGAGCAATATCTGACCAAGCCATTCACCCGTGAAGAACTACTGAGCGCGATCCGTACGTACGTCAACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8P6P2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684

Multiple sequence alignment