Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | EL092_RS06370 | Genome accession | NZ_LR134291 |
| Coordinates | 1316871..1317983 (-) | Length | 370 a.a. |
| NCBI ID | WP_012000665.1 | Uniprot ID | A8AXP5 |
| Organism | Streptococcus gordonii strain NCTC7868 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1311871..1322983
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL092_RS06335 (NCTC7868_01261) | mnmE | 1312100..1313473 (+) | 1374 | WP_012000661.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| EL092_RS06340 (NCTC7868_01262) | - | 1313624..1314193 (-) | 570 | WP_041789701.1 | TlpA family protein disulfide reductase | - |
| EL092_RS06345 (NCTC7868_01263) | - | 1314633..1315331 (-) | 699 | WP_012000663.1 | LrgB family protein | - |
| EL092_RS06350 (NCTC7868_01264) | - | 1315324..1315704 (-) | 381 | WP_008809214.1 | CidA/LrgA family protein | - |
| EL092_RS06365 (NCTC7868_01267) | - | 1316480..1316818 (-) | 339 | WP_012000664.1 | metal-sulfur cluster assembly factor | - |
| EL092_RS06370 (NCTC7868_01268) | rpoS | 1316871..1317983 (-) | 1113 | WP_012000665.1 | RNA polymerase sigma factor RpoD | Regulator |
| EL092_RS06375 (NCTC7868_01269) | dnaG | 1317986..1319767 (-) | 1782 | WP_012000666.1 | DNA primase | - |
| EL092_RS06380 (NCTC7868_01270) | mscL | 1319973..1320353 (+) | 381 | WP_012000667.1 | large conductance mechanosensitive channel protein MscL | - |
| EL092_RS06385 (NCTC7868_01271) | rpsU | 1320461..1320637 (-) | 177 | WP_000048054.1 | 30S ribosomal protein S21 | - |
| EL092_RS06390 (NCTC7868_01272) | - | 1320764..1321447 (-) | 684 | WP_012000668.1 | DUF4956 domain-containing protein | - |
| EL092_RS06395 | - | 1321458..1322189 (-) | 732 | Protein_1240 | polyphosphate polymerase domain-containing protein | - |
Sequence
Protein
Download Length: 370 a.a. Molecular weight: 42403.10 Da Isoelectric Point: 4.5140
>NTDB_id=1000211 EL092_RS06370 WP_012000665.1 1316871..1317983(-) (rpoS) [Streptococcus gordonii strain NCTC7868]
MATKQKEVTTFDVQVAEFIRNHKKAGTVIDDEINDKLIIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLHNEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAILVEQGDTEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED
MATKQKEVTTFDVQVAEFIRNHKKAGTVIDDEINDKLIIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLHNEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAILVEQGDTEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED
Nucleotide
Download Length: 1113 bp
>NTDB_id=1000211 EL092_RS06370 WP_012000665.1 1316871..1317983(-) (rpoS) [Streptococcus gordonii strain NCTC7868]
ATGGCTACAAAACAAAAAGAAGTAACAACATTTGACGTACAAGTTGCAGAATTTATTCGAAACCATAAAAAGGCTGGTAC
GGTAATTGATGATGAAATTAATGATAAATTGATTATTCCTTTTACCTTAGATGCAGATGGTATCGAAGATTTGTTGCAAC
GTATTCAAGATGCAGGGATTTCTATTACAGATAAAGAAGGGAATCCAAGTGCACGTGTTTTACACAACGAAGAGGAAGAA
GCAGAGCTAACTGATGAAGAACTTTTAGGTAGCAATTCAGCTAAAGTCAACGATCCTGTTCGTATGTATCTGAAAGAAAT
TGGAGTCGTTCCACTTTTGACAAACGAAGAAGAGCAAGAATTGGCAATCTTGGTAGAGCAGGGCGATACTGAGGCTAAGC
AACGTTTGGCTGAAGCCAACCTTCGCTTGGTAGTTTCTATTGCTAAACGTTATGTTGGACGTGGCATGCAGTTCCTTGAC
TTGATCCAAGAAGGAAATATGGGCTTGATGAAGGCCGTTGACAAGTTTGACTATACCAAAGGATTTAAGTTTTCAACGTA
TGCAACTTGGTGGATCCGTCAGGCCATTACCCGTGCGATTGCTGACCAAGCTAGAACAATCCGAATCCCAGTTCACATGG
TAGAAACGATTAATAAGCTAGTTCGTGAGCAACGCAATCTCTTGCAAGAATTAGGCCAAGATCCAACGCCTGAGCAGATT
GCTGAGCGTATGGATATGACACCAGATAAGGTTCGTGAGATTCTCAAGATTGCCCAGGAGCCAGTTTCTCTGGAAACACC
TATCGGTGAGGAAGATGATAGCCATCTGGGTGACTTTATCGAAGACGAAGTAATTGAAAATCCAGTTGATTACACAACTC
GTGTTGTTCTTCGTGAGCAGCTGGATGAAGTTTTAGACACTCTTACAGATCGTGAAGAAAATGTTCTTCGTCTGCGTTTT
GGTTTGGATGATGGTAAAATGCGGACCTTGGAAGATGTTGGTAAAGTTTTCAATGTGACACGTGAACGCATTCGCCAAAT
TGAAGCTAAAGCTCTACGTAAACTACGCCACCCAAGCCGTAGCAAGCCACTCCGTGATTTCATTGAAGATTAA
ATGGCTACAAAACAAAAAGAAGTAACAACATTTGACGTACAAGTTGCAGAATTTATTCGAAACCATAAAAAGGCTGGTAC
GGTAATTGATGATGAAATTAATGATAAATTGATTATTCCTTTTACCTTAGATGCAGATGGTATCGAAGATTTGTTGCAAC
GTATTCAAGATGCAGGGATTTCTATTACAGATAAAGAAGGGAATCCAAGTGCACGTGTTTTACACAACGAAGAGGAAGAA
GCAGAGCTAACTGATGAAGAACTTTTAGGTAGCAATTCAGCTAAAGTCAACGATCCTGTTCGTATGTATCTGAAAGAAAT
TGGAGTCGTTCCACTTTTGACAAACGAAGAAGAGCAAGAATTGGCAATCTTGGTAGAGCAGGGCGATACTGAGGCTAAGC
AACGTTTGGCTGAAGCCAACCTTCGCTTGGTAGTTTCTATTGCTAAACGTTATGTTGGACGTGGCATGCAGTTCCTTGAC
TTGATCCAAGAAGGAAATATGGGCTTGATGAAGGCCGTTGACAAGTTTGACTATACCAAAGGATTTAAGTTTTCAACGTA
TGCAACTTGGTGGATCCGTCAGGCCATTACCCGTGCGATTGCTGACCAAGCTAGAACAATCCGAATCCCAGTTCACATGG
TAGAAACGATTAATAAGCTAGTTCGTGAGCAACGCAATCTCTTGCAAGAATTAGGCCAAGATCCAACGCCTGAGCAGATT
GCTGAGCGTATGGATATGACACCAGATAAGGTTCGTGAGATTCTCAAGATTGCCCAGGAGCCAGTTTCTCTGGAAACACC
TATCGGTGAGGAAGATGATAGCCATCTGGGTGACTTTATCGAAGACGAAGTAATTGAAAATCCAGTTGATTACACAACTC
GTGTTGTTCTTCGTGAGCAGCTGGATGAAGTTTTAGACACTCTTACAGATCGTGAAGAAAATGTTCTTCGTCTGCGTTTT
GGTTTGGATGATGGTAAAATGCGGACCTTGGAAGATGTTGGTAAAGTTTTCAATGTGACACGTGAACGCATTCGCCAAAT
TGAAGCTAAAGCTCTACGTAAACTACGCCACCCAAGCCGTAGCAAGCCACTCCGTGATTTCATTGAAGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.918 |
78.919 |
0.37 |