Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   EL092_RS05005 Genome accession   NZ_LR134291
Coordinates   1049817..1052036 (+) Length   739 a.a.
NCBI ID   WP_041789647.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7868     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1044817..1057036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL092_RS04980 (NCTC7868_00992) rnz 1045443..1046372 (+) 930 WP_012000412.1 ribonuclease Z -
  EL092_RS04985 (NCTC7868_00993) - 1046477..1047232 (+) 756 WP_012000413.1 SDR family NAD(P)-dependent oxidoreductase -
  EL092_RS04990 (NCTC7868_00994) - 1047272..1047976 (+) 705 WP_012000414.1 class I SAM-dependent methyltransferase -
  EL092_RS04995 (NCTC7868_00995) - 1048032..1049084 (+) 1053 WP_012000415.1 acyltransferase family protein -
  EL092_RS05000 (NCTC7868_00996) - 1049121..1049711 (+) 591 WP_012000416.1 HD domain-containing protein -
  EL092_RS05005 (NCTC7868_00997) recJ 1049817..1052036 (+) 2220 WP_041789647.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  EL092_RS05010 (NCTC7868_00998) - 1052122..1052634 (+) 513 WP_012000418.1 adenine phosphoribosyltransferase -
  EL092_RS05015 (NCTC7868_00999) metA 1052734..1053675 (+) 942 WP_012000419.1 homoserine O-acetyltransferase MetA -
  EL092_RS05020 (NCTC7868_01000) - 1053684..1054364 (+) 681 WP_012000420.1 DnaD domain-containing protein -
  EL092_RS05025 (NCTC7868_01001) yghU 1054432..1055220 (+) 789 WP_012000421.1 glutathione-dependent disulfide-bond oxidoreductase -
  EL092_RS05030 (NCTC7868_01002) - 1055362..1056051 (+) 690 WP_012000422.1 tRNA (adenine(22)-N(1))-methyltransferase -
  EL092_RS05035 (NCTC7868_01003) - 1056038..1056835 (+) 798 WP_012000423.1 Nif3-like dinuclear metal center hexameric protein -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 82664.17 Da        Isoelectric Point: 4.3635

>NTDB_id=1000199 EL092_RS05005 WP_041789647.1 1049817..1052036(+) (recJ) [Streptococcus gordonii strain NCTC7868]
MISSKYDWQFATNVTDENFLKKAKKAGLDPSAASLLYQRGVQTEEALQEFLEPSLDQLHDPYDLHDMERAVERIRAAIEN
YEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFTDGYGPNSSVYKYFIENQGISLIITVDNGVAGLEAIELAQ
SLGVDVIVTDHHSMPEELPNAYAIVHPEHSGADYPFKHLAGCGVAFKLATALLEEVQVELLDLVAIGTIADMVSLTGENR
ILVKYGLSVLKNTQRVGLQELFKIAGIQPDELDEETVGFQLAPRLNALGRLDDPNPAVELLTGFDDEEARDIALMINQKN
DERKEIVQQIYEEAQTMLEPKKPVQVLAKEGWNPGVLGIVAGRLLEELHQPVIVLNIEDGIAKGSARSIEAVNIFEALDS
HRDLFVAFGGHAGAAGMTLEADKLAELSDILTAYILDNDLDLTGKTALYLDEELHLPELTLDTLKSFERLAPFGMDNKKP
LFYLKDFKVDNARTMGAGNSHLKLKISQQDAAFEVVAFGQGNLATEFAQTKNLELAVSLSVNKWNGQTSLQLMLVDARVD
GVQLFNIRSKNASLPDKVPVLRFTEELPDLANSRAVVVYDLPDDLQVLKEILQSQDFEAIYFKNEIAKPYYLTGYGSREQ
FAKLYKTIYQFPEFDVRYKLKDLAAYLKIDQILLVKMIQIFEELGFVSITEGVMTVNKEAEKKEIENSHIYQDLKRLVKE
QELMALGTVQEIYDYLMEK

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=1000199 EL092_RS05005 WP_041789647.1 1049817..1052036(+) (recJ) [Streptococcus gordonii strain NCTC7868]
ATGATTAGCTCAAAATACGACTGGCAGTTTGCCACTAATGTTACAGATGAAAATTTTTTAAAAAAGGCTAAGAAAGCTGG
ATTAGACCCCTCCGCTGCTAGTCTCCTTTACCAAAGAGGTGTGCAGACTGAAGAGGCCTTACAGGAATTTTTGGAGCCTA
GTTTAGACCAGCTTCACGACCCTTATGACCTGCATGATATGGAGCGGGCAGTGGAGCGCATTCGCGCAGCGATTGAGAAT
TATGAGCAGATTTTGATCTATGGCGATTACGATGCTGATGGGATGACCTCGGCATCTATTGTCAAGGAAGCCTTGGAGCA
GCTGGGAGCTGAGTGTCAGGTCTACCTGCCCAATCGCTTTACGGATGGCTATGGGCCTAATAGCAGTGTTTACAAGTATT
TTATTGAAAATCAAGGCATTTCGCTCATTATTACAGTAGATAATGGAGTGGCTGGTCTTGAAGCTATCGAGCTGGCCCAG
TCTCTGGGCGTGGATGTTATTGTGACAGATCACCACTCTATGCCTGAGGAGTTGCCAAACGCCTATGCGATTGTCCATCC
GGAGCATAGCGGAGCGGATTACCCTTTCAAGCATTTAGCTGGTTGTGGGGTGGCTTTTAAGCTGGCAACAGCCTTGCTGG
AAGAAGTCCAAGTCGAACTTTTGGACTTAGTAGCCATTGGCACCATTGCCGATATGGTCAGTCTGACAGGGGAGAATCGG
ATTTTGGTCAAATATGGTCTCTCCGTCCTCAAAAATACCCAGCGAGTAGGACTTCAGGAACTCTTCAAAATCGCTGGCAT
TCAGCCTGACGAACTGGATGAAGAAACGGTTGGCTTCCAGCTTGCTCCCCGACTCAACGCCTTGGGAAGGCTGGATGATC
CAAATCCAGCAGTTGAGCTTTTGACTGGCTTTGATGACGAAGAAGCTCGTGATATTGCTCTCATGATCAACCAGAAAAAT
GACGAGCGCAAGGAAATCGTCCAGCAGATTTATGAAGAAGCACAAACCATGCTGGAGCCTAAGAAACCAGTACAGGTGCT
TGCTAAGGAAGGCTGGAACCCTGGTGTGCTAGGAATTGTCGCTGGGCGCTTGCTGGAAGAGCTGCACCAGCCAGTCATAG
TGCTTAATATCGAGGATGGTATCGCTAAGGGCAGCGCCCGCAGTATTGAAGCGGTCAATATTTTTGAGGCCTTGGACAGT
CACCGTGATCTTTTTGTAGCCTTTGGCGGGCACGCTGGAGCGGCTGGAATGACTCTTGAAGCAGACAAACTAGCAGAGCT
ATCTGATATCCTGACAGCCTACATTTTAGACAATGATTTGGATTTGACTGGCAAAACAGCCCTGTATTTAGATGAGGAGC
TGCATCTGCCAGAACTGACCCTTGACACACTCAAAAGCTTTGAGAGACTGGCCCCTTTTGGTATGGACAATAAGAAGCCG
CTTTTTTACCTCAAGGACTTTAAAGTGGATAATGCTCGGACTATGGGGGCTGGCAATAGCCATCTCAAGCTGAAAATTTC
TCAGCAAGATGCTGCTTTTGAAGTAGTAGCTTTTGGTCAAGGAAACCTCGCAACAGAGTTTGCCCAAACCAAGAATCTGG
AGCTAGCTGTCAGTCTCTCTGTCAATAAATGGAATGGACAGACCAGTCTCCAGCTCATGCTGGTAGATGCCCGTGTGGAC
GGCGTTCAGCTTTTCAATATCCGTAGCAAAAATGCGTCGTTGCCTGACAAGGTTCCTGTCTTGCGCTTCACAGAGGAATT
GCCAGATTTGGCAAATAGCAGAGCAGTTGTGGTTTATGACCTGCCTGATGATTTGCAGGTCTTGAAGGAGATTCTTCAGT
CTCAGGATTTTGAAGCGATTTACTTTAAGAATGAGATTGCCAAGCCATACTACCTGACAGGTTATGGTTCTCGTGAGCAG
TTTGCCAAACTCTACAAGACAATCTATCAGTTCCCCGAGTTTGATGTTCGCTATAAACTCAAGGATCTGGCAGCTTATCT
GAAAATTGACCAGATTCTCTTGGTCAAAATGATTCAGATTTTTGAAGAGCTGGGCTTTGTCAGCATCACAGAAGGCGTCA
TGACGGTCAATAAGGAAGCTGAAAAGAAAGAAATCGAAAACAGTCACATTTACCAAGACCTCAAGCGCCTGGTCAAGGAA
CAAGAACTTATGGCTTTGGGCACTGTGCAGGAAATTTATGATTATTTGATGGAGAAATAA

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(592-733)

RecJ OB domain (RecJ_OB)

(451-556)

DHHA1 domain (DHHA1)

(317-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

76.049

100

0.76
  recJ Bacillus subtilis subsp. subtilis str. 168

38.163

100

0.399