Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   EL191_RS04410 Genome accession   NZ_LR134290
Coordinates   969977..971335 (+) Length   452 a.a.
NCBI ID   WP_041976770.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina strain NCTC10897     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 964977..976335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL191_RS04380 (NCTC10897_00879) - 965437..966615 (+) 1179 WP_052435025.1 glycine hydroxymethyltransferase -
  EL191_RS04385 (NCTC10897_00880) - 966692..967468 (+) 777 WP_017361408.1 ferredoxin--NADP reductase -
  EL191_RS04390 (NCTC10897_00881) - 967469..968494 (-) 1026 WP_013714007.1 CNNM domain-containing protein -
  EL191_RS04395 (NCTC10897_00882) - 968690..968932 (+) 243 WP_013714008.1 YdcH family protein -
  EL191_RS04400 (NCTC10897_00883) - 969012..969290 (+) 279 WP_013714009.1 YdcH family protein -
  EL191_RS04405 (NCTC10897_00884) - 969390..969884 (-) 495 WP_041977170.1 GNAT family N-acetyltransferase -
  EL191_RS04410 (NCTC10897_00885) radA/sms 969977..971335 (+) 1359 WP_041976770.1 DNA repair protein RadA Machinery gene
  EL191_RS24370 (NCTC10897_00886) - 971521..971673 (+) 153 WP_017361407.1 hypothetical protein -
  EL191_RS04415 (NCTC10897_00887) - 971681..972052 (-) 372 WP_013714012.1 PilZ domain-containing protein -
  EL191_RS04420 (NCTC10897_00888) - 972218..972724 (+) 507 WP_013714013.1 DUF3015 domain-containing protein -
  EL191_RS04425 (NCTC10897_00889) glyA 972929..974182 (-) 1254 WP_013714014.1 serine hydroxymethyltransferase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48475.03 Da        Isoelectric Point: 7.6869

>NTDB_id=1000097 EL191_RS04410 WP_041976770.1 969977..971335(+) (radA/sms) [Ectopseudomonas mendocina strain NCTC10897]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLVETVVEGATPSGRTGWAGDKANIKTLAEVSVEEIPRFSTASGELDRV
LGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAQRFPALYVTGEESQQQVAMRARRLDLPQDKLKVMTETCIESIIATAR
QEKPKVMVIDSIQTIFTKQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGES
DGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANPR
RVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVISSLRNRPLEHDLLVFGEIGLSGEIR
PVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIVAVTRLEQALDALFE

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=1000097 EL191_RS04410 WP_041976770.1 969977..971335(+) (radA/sms) [Ectopseudomonas mendocina strain NCTC10897]
ATGGCCAAGGCAAAACGCATGTACGGCTGCACCGAGTGCGGCGCCACCTTTCCCAAGTGGGCGGGACAGTGTGGTGAGTG
CGGCGCCTGGAATACCCTGGTGGAAACCGTGGTCGAGGGCGCCACGCCCAGCGGGCGCACCGGTTGGGCTGGCGACAAGG
CCAATATCAAGACTCTGGCCGAGGTCAGCGTCGAGGAAATTCCGCGCTTTTCCACCGCCTCCGGCGAATTGGATCGTGTG
CTCGGTGGCGGCCTGGTGGATGGCTCGGTGGTGCTGATCGGCGGCGACCCAGGCATCGGCAAGTCGACCATCCTCCTGCA
GACCCTGTGCAACATCGCCCAGCGCTTTCCGGCGTTGTACGTCACCGGTGAGGAATCGCAACAGCAGGTGGCCATGCGCG
CGCGGCGTCTGGACTTGCCGCAGGACAAGCTCAAGGTGATGACCGAGACCTGCATCGAGTCGATCATCGCCACCGCGCGC
CAGGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACCATCTTTACCAAGCAACTGCAATCGGCACCGGGTGGCGT
CGCCCAGGTGCGCGAGAGCGCGGCGCTGCTGGTGCGCTTCGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCCACG
TCACCAAGGAGGGCGCGCTGGCCGGCCCGCGCGTGCTCGAGCACATGGTCGATACCGTGCTGTATTTCGAGGGTGAGTCC
GATGGTCGTCTACGCCTGCTGCGGGCGGTGAAGAATCGCTTCGGTGCGGTCAACGAGCTGGGCGTGTTCGGCATGACCGA
CAAGGGCCTCAAGGAGGTTTCCAACCCCTCGGCGATCTTTCTCACCCGCGCTCAGGAGGCAGTGCCTGGCAGTGTGGTGA
TGGCCACCTGGGAAGGTTCGCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTCGACACCAGCCACCTGGCCAACCCGCGG
CGGGTGACTCTGGGCCTGGATCAGAACCGCCTGGCCATGCTTCTGGCGGTGTTGCACCGCCACGGCGGGATCCCGACCTA
TGATCAGGACGTATTCCTCAACGTAGTCGGTGGGGTCAAGGTGCTGGAAACCGCCTCTGATCTCGCGCTGATGGCGGCGG
TGATTTCCAGCCTGCGCAACCGGCCGTTGGAGCACGATTTGCTGGTGTTCGGCGAGATTGGTTTGTCCGGCGAGATCCGC
CCGGTACCGAGTGGCCAGGAGCGGCTGAAAGAGGCTGCCAAGCACGGTTTCAAGCGTGCAATCGTGCCCAAGGGTAATGC
ACCGAAGGAGGCTCCGCCGGGCCTGCAGATAGTCGCTGTCACGCGACTGGAACAGGCGCTGGATGCGCTGTTCGAGTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.124

100

0.471
  radA Streptococcus pneumoniae Rx1

46.272

100

0.467
  radA Streptococcus pneumoniae R6

46.272

100

0.467
  radA Streptococcus pneumoniae TIGR4

46.272

100

0.467
  radA Streptococcus pneumoniae D39

46.272

100

0.467
  radA Streptococcus mitis SK321

46.46

100

0.465
  radA Streptococcus mitis NCTC 12261

46.239

100

0.462

Multiple sequence alignment