Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   EL191_RS02935 Genome accession   NZ_LR134290
Coordinates   629908..632127 (-) Length   739 a.a.
NCBI ID   WP_041976352.1    Uniprot ID   -
Organism   Ectopseudomonas mendocina strain NCTC10897     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 624908..637127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL191_RS02915 (NCTC10897_00589) hslU 625013..626353 (-) 1341 WP_013713718.1 HslU--HslV peptidase ATPase subunit -
  EL191_RS02920 (NCTC10897_00590) hslV 626533..627063 (-) 531 WP_024306625.1 ATP-dependent protease subunit HslV -
  EL191_RS02925 (NCTC10897_00591) - 627302..627976 (-) 675 WP_013713719.1 SPOR domain-containing protein -
  EL191_RS02930 (NCTC10897_00592) argS 627977..629716 (-) 1740 WP_041976350.1 arginine--tRNA ligase -
  EL191_RS02935 (NCTC10897_00593) priA 629908..632127 (-) 2220 WP_041976352.1 primosomal protein N' Machinery gene
  EL191_RS02940 (NCTC10897_00594) rpmE 632286..632498 (+) 213 WP_003459015.1 50S ribosomal protein L31 -
  EL191_RS02945 (NCTC10897_00595) - 632525..633325 (+) 801 WP_041976355.1 thermonuclease family protein -
  EL191_RS02950 (NCTC10897_00596) - 633322..634758 (+) 1437 WP_041976358.1 M48 family metalloprotease -
  EL191_RS02955 (NCTC10897_00597) - 634863..636131 (+) 1269 WP_041976362.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 81922.16 Da        Isoelectric Point: 8.5509

>NTDB_id=1000092 EL191_RS02935 WP_041976352.1 629908..632127(-) (priA) [Ectopseudomonas mendocina strain NCTC10897]
MPNLILRLALPSPLRRLFDYLAPAGVSRSALQPGVRLRVPFGRREMIGVLVEVDSQSEVPLDKLKPALELLDARPPLPGP
LFKLCLWTAQYYQHSLGDTLSWALPVLLRQGEPAETRQERYWLASKGASVDDPRLARAPRQRDALKALAQHPHGVAHSLL
SQLQLNRDSLQLLHEKGLVRVEVRRTQPHAKPAHWLAQPELPLNAEQRAAVNAVASGWDQFNAFLLAGVTGSGKTEVYLQ
LIHQCLEAGKQALVLIPEINLGPQTFDRFARRFNARIAMLHSAVNDRDRLDAWLAARDGEADIIIGTRSALFTPMKNPGL
IIVDEEHDASYKQQEGLRYHARDLALVRARQEEVPIVLGSATPSLESLHNAYTGRYALLKLTQRAGGASQPRFLRLDVKS
RPLDSGISGPMQQAIAQTLAAGQQVLVFLNRRGFAPTLLCHDCGWLSECPRCDARMTVHQRYQELRCHHCGHVEKQPSNC
PKCQHVDLRPVGAGTERAEERLAVLFPDYPVLRIDRDSTSRKGAMDRLFATINKGEPCILVGTQMLAKGHHFPRVTLVSI
LDADGGLFSADFRASERMAQLIVQVAGRAGRAEEPGKVIIQSHLADHPLLVQLTEQGYFAFAEQALSERRSAGLPPFCHL
ALLRAEAHKPGQAESFLDDACSEAEHLLGELGSSGIELLGPVPAPMERRAGRFRAQLLVQGNARAPLHRLLNHWLHALEQ
MPSGRAVRWSLDVDPIDLF

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=1000092 EL191_RS02935 WP_041976352.1 629908..632127(-) (priA) [Ectopseudomonas mendocina strain NCTC10897]
TTGCCCAACCTGATCCTGCGCCTTGCCCTGCCCTCGCCGTTGCGCCGTCTGTTCGACTACCTCGCCCCCGCTGGCGTATC
GCGCAGCGCCTTGCAGCCAGGCGTGCGCCTGCGCGTGCCCTTCGGCCGGCGCGAGATGATCGGCGTGCTGGTTGAAGTCG
ACAGCCAGAGTGAGGTACCACTCGACAAGCTCAAGCCCGCCCTGGAATTGCTCGATGCTCGCCCACCGCTGCCGGGGCCG
CTATTCAAACTGTGCCTGTGGACAGCGCAGTACTACCAGCACAGCCTCGGCGACACCCTGAGCTGGGCCTTGCCGGTACT
GCTGCGTCAGGGCGAGCCCGCCGAAACCCGCCAGGAACGCTATTGGCTGGCCAGCAAAGGCGCCAGTGTCGACGACCCAC
GCCTGGCCCGCGCCCCGCGCCAGCGCGACGCACTCAAGGCACTGGCGCAACATCCGCATGGCGTGGCCCACAGCCTGCTC
AGCCAGCTGCAACTTAACCGCGACAGCCTGCAACTGCTGCATGAGAAGGGGCTGGTGCGGGTCGAGGTGCGCCGCACCCA
GCCGCATGCCAAGCCTGCGCACTGGCTGGCACAACCGGAACTGCCGCTGAACGCCGAGCAGCGCGCGGCCGTCAACGCCG
TGGCGTCAGGTTGGGACCAGTTCAATGCCTTTCTGCTCGCAGGCGTCACCGGTAGCGGCAAGACCGAGGTGTACCTGCAG
CTTATCCACCAATGCCTGGAGGCCGGCAAGCAGGCCCTGGTGCTGATCCCCGAGATCAACCTCGGCCCGCAGACCTTCGA
CCGCTTCGCCCGACGTTTCAACGCCCGCATCGCCATGCTGCATTCGGCGGTGAACGATCGAGATCGCCTTGACGCCTGGT
TGGCGGCGCGCGATGGCGAGGCCGACATCATCATCGGCACCCGCTCGGCACTGTTCACGCCGATGAAGAACCCAGGGCTG
ATCATCGTCGATGAAGAACACGACGCTTCCTATAAACAGCAGGAAGGTCTGCGCTACCACGCCCGCGACCTGGCGCTGGT
TCGCGCACGCCAGGAAGAGGTACCGATCGTCCTCGGCTCGGCCACACCGTCGCTGGAAAGCCTGCACAACGCCTACACCG
GTCGCTACGCCCTGCTCAAGCTGACCCAGCGCGCCGGCGGCGCCAGCCAGCCGCGCTTCCTGCGCCTGGATGTGAAGAGC
CGGCCACTGGACTCGGGCATCTCCGGGCCGATGCAGCAGGCCATCGCCCAGACCCTGGCGGCCGGCCAGCAGGTACTGGT
GTTTCTCAACCGCCGCGGCTTCGCCCCAACGCTGCTCTGCCACGACTGCGGCTGGCTGTCCGAATGCCCACGTTGTGATG
CACGCATGACCGTGCACCAGCGTTATCAGGAACTGCGCTGCCATCACTGCGGCCATGTCGAGAAGCAGCCGAGCAATTGC
CCGAAATGCCAGCACGTCGACCTGCGTCCGGTCGGCGCTGGCACCGAGCGCGCCGAAGAGCGTCTGGCGGTGCTGTTCCC
CGACTACCCGGTGCTGCGCATCGACCGCGACAGCACCTCGCGCAAGGGCGCGATGGATCGCCTGTTCGCCACCATTAACA
AGGGCGAGCCGTGTATCCTGGTCGGCACGCAGATGCTCGCCAAGGGGCACCACTTCCCGCGGGTGACGCTGGTGTCTATC
CTCGATGCCGACGGTGGCCTGTTCTCCGCTGACTTTCGCGCTAGCGAACGCATGGCGCAGTTGATCGTACAGGTCGCCGG
GCGTGCTGGACGTGCCGAGGAACCAGGCAAGGTGATCATCCAGAGCCACCTGGCCGACCATCCGCTGCTGGTGCAACTGA
CCGAGCAGGGCTACTTCGCCTTCGCCGAACAGGCGCTGAGCGAACGCCGCAGTGCCGGCCTGCCGCCGTTCTGCCATCTG
GCTCTGCTGCGCGCCGAAGCGCACAAGCCTGGCCAGGCAGAAAGCTTCCTCGATGATGCCTGCAGCGAGGCCGAGCATCT
GCTGGGGGAGTTGGGCTCGTCCGGCATCGAACTGTTAGGCCCGGTACCGGCGCCCATGGAACGTCGCGCCGGCCGCTTCC
GCGCGCAACTGCTGGTGCAGGGCAACGCTCGTGCACCGCTGCACCGCTTGCTCAACCACTGGCTGCATGCGCTGGAACAA
ATGCCTAGCGGTCGTGCAGTGCGCTGGTCGCTGGATGTCGACCCGATCGACCTATTCTGA

Domains

Predicted by InterProScan.

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(449-475)

DEAD/DEAH box helicase (DEAD)

(207-367)

Primosomal protein N C-terminal domain (PriA_C)

(636-735)

3DNA-binding domain (3BD) (PriA_3primeBD)

(9-105)

Helicase conserved C-terminal domain (Helicase_C)

(525-592)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

47.548

99.323

0.472

Multiple sequence alignment