Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   EL070_RS04820 Genome accession   NZ_LR134284
Coordinates   918911..919981 (+) Length   356 a.a.
NCBI ID   WP_027968836.1    Uniprot ID   Q5XC26
Organism   Streptococcus pyogenes strain NCTC8232     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 913911..924981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL070_RS04800 (NCTC8232_00957) - 914903..915601 (+) 699 WP_164552704.1 GntR family transcriptional regulator -
  EL070_RS04805 (NCTC8232_00958) - 915699..916031 (+) 333 WP_002989745.1 putative DNA-binding protein -
  EL070_RS04810 (NCTC8232_00959) ffh 916046..917608 (+) 1563 WP_011017792.1 signal recognition particle protein -
  EL070_RS04815 (NCTC8232_00960) - 917743..918441 (-) 699 WP_085634308.1 XRE family transcriptional regulator -
  EL070_RS04820 (NCTC8232_00961) xerS 918911..919981 (+) 1071 WP_027968836.1 tyrosine recombinase XerS Machinery gene
  EL070_RS04825 (NCTC8232_00962) - 920680..921162 (+) 483 WP_002984600.1 PASTA domain-containing protein -
  EL070_RS04830 (NCTC8232_00963) citC 921251..922303 (+) 1053 WP_111705621.1 [citrate (pro-3S)-lyase] ligase -
  EL070_RS04835 (NCTC8232_00964) - 922413..923807 (-) 1395 WP_164552687.1 oxaloacetate decarboxylase subunit alpha -
  EL070_RS04840 (NCTC8232_00965) citX 923822..924400 (-) 579 WP_010922331.1 citrate lyase holo-[acyl-carrier protein] synthase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41487.57 Da        Isoelectric Point: 9.5552

>NTDB_id=1000041 EL070_RS04820 WP_027968836.1 918911..919981(+) (xerS) [Streptococcus pyogenes strain NCTC8232]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIISLLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1000041 EL070_RS04820 WP_027968836.1 918911..919981(+) (xerS) [Streptococcus pyogenes strain NCTC8232]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGTCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCTTATCAAGCCTTTATAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGAGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTTCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5XC26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.337

100

0.803