ICEberg
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ICE family: PAPI-1
PAPI-1 is a well studied ICE. We selected it as a reference and defined PAPI-1 family. We classified any ICE that encodes an integrase gene closely related to int(PAPI-1), defined as over 60% protein homology and that that has significant sequence alignment and syntenic 'core' structure into the PAPI-1 family.

#IDICE nameStrainReplicon
1173 experimental pKLC102Pseudomonas aeruginosa C-
2175 experimental PAPI-1Pseudomonas aeruginosa UCBPP-PA14NC_008463
3176 experimental PAGI-5Pseudomonas aeruginosa PSE9-
4177 in_silico ICEPae2192-1Pseudomonas aeruginosa 2192-
5178 in_silico ICEPaeC3719-1Pseudomonas aeruginosa C3719
6179 in_silico ICEPaePACS2-1Pseudomonas aeruginosa PACS2-
7235 in_silico PFGI-1Pseudomonas fluorescens Pf-5NC_004129
experimental Data derived from experimental literature
in_silico Putative ICEs predicted by bioinformatic methods
(1) Carter MQ et al. (2010). The Pseudomonas aeruginosa pathogenicity island PAPI-1 is transferred via a novel type IV pilus. J Bacteriol. 192(13):3249-58. [PudMed:20363934] experimental
(2) Harrison EM et al. (2010). Pathogenicity islands PAPI-1 and PAPI-2 contribute individually and synergistically to the virulence of Pseudomonas aeruginosa strain PA14. Infect Immun. 78(4):1437-46. [PudMed:20123716] experimental
(3) Mavrodi DV et al. (2009). Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5. BMC Microbiol. 9:08. [PudMed:19144133]
(4) Mathee K et al. (2008). Dynamics of Pseudomonas aeruginosa genome evolution. Proc Natl Acad Sci U S A. 105(8):3100-5. [PudMed:18287045]
(5) He J et al. (2004). The broad host range pathogen Pseudomonas aeruginosa strain PA14 carries two pathogenicity islands harboring plant and animal virulence genes. Proc Natl Acad Sci U S A. 101(8):2530-5. [PudMed:14983043] experimental
(6) Klockgether J et al. (2004). Sequence analysis of the mobile genome island pKLC102 of Pseudomonas aeruginosa C. J Bacteriol. 186(2):518-34. [PudMed:14702321] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU