| ICE family: PAPI-1 | ||||
| PAPI-1 is a well studied ICE. We selected it as a reference and defined PAPI-1 family. We classified any ICE that encodes an integrase gene closely related to int(PAPI-1), defined as over 60% protein homology and that that has significant sequence alignment and syntenic 'core' structure into the PAPI-1 family. | ||||
| # | ID | ICE name | Strain | Replicon |
| 1 | 173  | pKLC102 | Pseudomonas aeruginosa C | - |
| 2 | 175 | PAPI-1 | Pseudomonas aeruginosa UCBPP-PA14 | NC_008463 |
| 3 | 176 | PAGI-5 | Pseudomonas aeruginosa PSE9 | - |
| 4 | 177  | ICEPae2192-1 | Pseudomonas aeruginosa 2192 | - |
| 5 | 178 | ICEPaeC3719-1 | Pseudomonas aeruginosa C3719 | |
| 6 | 179 | ICEPaePACS2-1 | Pseudomonas aeruginosa PACS2 | - |
| 7 | 235 | PFGI-1 | Pseudomonas fluorescens Pf-5 | NC_004129 |
| Data derived from experimental literature | ||||
| Putative ICEs predicted by bioinformatic methods | ||||
| Element | No. of sequences | Download | Alignment |
| Proteins | 427 | Fasta | Multiple protein sequence alignment by MUSCLE online |
| ICEs | 6 | Fasta | Nucleotide sequence comparison by webACT |
|
(1) Carter MQ et al. (2010). The Pseudomonas aeruginosa pathogenicity island PAPI-1 is transferred via a novel type IV pilus. J Bacteriol. 192(13):3249-58. [PudMed:20363934]
|
|
(2) Harrison EM et al. (2010). Pathogenicity islands PAPI-1 and PAPI-2 contribute individually and synergistically to the virulence of Pseudomonas aeruginosa strain PA14. Infect Immun. 78(4):1437-46. [PudMed:20123716]
|
| (3) Mavrodi DV et al. (2009). Mobile genetic elements in the genome of the beneficial rhizobacterium Pseudomonas fluorescens Pf-5. BMC Microbiol. 9:08. [PudMed:19144133] |
| (4) Mathee K et al. (2008). Dynamics of Pseudomonas aeruginosa genome evolution. Proc Natl Acad Sci U S A. 105(8):3100-5. [PudMed:18287045] |
|
(5) He J et al. (2004). The broad host range pathogen Pseudomonas aeruginosa strain PA14 carries two pathogenicity islands harboring plant and animal virulence genes. Proc Natl Acad Sci U S A. 101(8):2530-5. [PudMed:14983043]
|
|
(6) Klockgether J et al. (2004). Sequence analysis of the mobile genome island pKLC102 of Pseudomonas aeruginosa C. J Bacteriol. 186(2):518-34. [PudMed:14702321]
|
| experimental literature |