ICEberg


(1) SPARQL Query for ICEO
Some SPARQL query usecases for ICEO(Integrative and Conjugative Element Ontology).

(2) ICEfinder, the online tool for ICE and IME detection.

The Perl-based local version of ICEfinder is also available. Please contact Hong-Yu OU.
It could run under Linux version 2.6.32-696.10.2.el6.x86_64 with no additional installations, after making sure everything has executable permissions.After downloading the compressed file 'ICEfinder_linux.tar.gz', please decompress it with gunzip and tar. Please read the file 'README.txt' to install and run the local version of ICEfinder.

(3) ICE comparison with webACT

(4) WU-BLAST2 search against the ICEs, IMEs or CIMEs in ICEberg

(5) HMMER3::phmmer search against ICE-encoding proteins in ICEberg

(6) VRprofile, detect virulence or antibiotic resistance genes and extended mobilome-related gene clusters, including ICEs (Li et al., Brief Bioinform, 2017)