ICEberg

SPARQL Query over ICEO, an Integrative and Conjugative Element Ontology

ICEO is free and open to all users.

Source code: https://github.com/ontoice/ICEO.

Visualization: http://www.ontobee.org/ontology/ICEO, or https://bioportal.bioontology.org/ontologies/ICEO.

Use case 2
Usage: Query of ICE-carrying A genes (included), B gene (excluded) and C gene (excluded)
Search Field	Search Parameter
Include
*A gene description()**	(e.g., non-ribosomal peptide synthetase)
Exclude
B gene description	(e.g., yersiniabactin)
Exclude
C gene description	(e.g., colibactin)
*Database()**

Use case 3
Usage: Query ICEs under a given bacterial taxon level, say, family or genus
Search Field	Search Parameter
taxonomy rank of Bacteria
Database

Use case 1
Usage: Query ICE-carrying genes, say, beta-lactamase genes
Search Field	Search Parameter
*Query gene description()**	(e.g., beta-lactamase)
*Database()**