ICEberg

Bioinformatics Tools/ Databases used by ICEberg
GMOD, the Generic Model Organism Database project PostgreSQL, an open source relational database management system GBrowse, a genome viewer WU-BLAST, the Washington University improved version of BLAST MUSCLE, protein multiple sequence alignment Jalview, a multiple alignment editor written in Java CGview, generate circular genome maps
Public database, to which ICEberg has a hyperlink path
NCBI Uniprot KB KEGG RCSB PDB TADB, a web-based resource for Type 2 toxin-antitoxin loci in Bacteria and Archaea ARDB, Antibiotic Resistance Genes Database VFDB, Virulence Factor database
Other tools or servers of interest
NCBI Microbial Genomes IS Finder, Reference Centre for Bacterial Insertion Sequences ACLAME, A Classification of Genetic Mobile Elements PAIDB, Pathogenicity island database HGT-DB, Horizontal Gene Transfer Database MobilomeFINDER, in silico and experimental discovery of bacterial genomic islands IslandViewer, a computational tool that integrates three different genomic island prediction methods SIGI-HMM, Prediction of Genomic Islands in Procaryotic Genomes Using HMMs Islander, Database of Genomic Islands IslandPath, An aid to the identification of genomics islands