ICEberg
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ICE family: ICEYe1
We selected ICEYe1 as a reference and defined ICEYe1 family. We classified any ICE that encodes an integrase gene closely related to int(ICEYe1), defined as over 60% protein homology and that has significant sequence alignment and syntenic 'core' structure into the this family.

#IDICE nameStrainReplicon
1112 in_silico ICEYe1Yersinia enterocolitica Y69-
2405 in_silico YAPI(ye)Yersinia enterocolitica subsp. enterocolitica 8081NC_008800
3406 experimental YAPIYersinia pseudotuberculosis 32777-
4407 in_silico YAPI(IP31758)Yersinia pseudotuberculosis IP 31758NC_009708
experimental Data derived from experimental literature
in_silico Putative ICEs predicted by bioinformatic methods
(1) Eppinger M et al. (2007). The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever. PLoS Genet. 3(8):e142. [PudMed:17784789]
(2) Thomson NR et al. (2006). The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081. PLoS Genet. 2(12):e206. [PudMed:17173484]
(3) Collyn F et al. (2004). YAPI, a new Yersinia pseudotuberculosis pathogenicity island. Infect Immun. 72(8):4784-90. [PudMed:15271940] experimental
(4) Collyn F et al. (2002). Yersinia pseudotuberculosis harbors a type IV pilus gene cluster that contributes to pathogenicity. Infect Immun. 70(11):6196-205. [PudMed:12379698] experimental
 
experimental experimental literature

Genomics & Bioinformatics Group in MML, SJTU