| ICE family: ICEYe1 | ||||
| We selected ICEYe1 as a reference and defined ICEYe1 family. We classified any ICE that encodes an integrase gene closely related to int(ICEYe1), defined as over 60% protein homology and that has significant sequence alignment and syntenic 'core' structure into the this family. | ||||
| # | ID | ICE name | Strain | Replicon |
| 1 | 112  | ICEYe1 | Yersinia enterocolitica Y69 | - |
| 2 | 405 | YAPI(ye) | Yersinia enterocolitica subsp. enterocolitica 8081 | NC_008800 |
| 3 | 406  | YAPI | Yersinia pseudotuberculosis 32777 | - |
| 4 | 407 | YAPI(IP31758) | Yersinia pseudotuberculosis IP 31758 | NC_009708 |
| Data derived from experimental literature | ||||
| Putative ICEs predicted by bioinformatic methods | ||||
| Element | No. of sequences | Download | Alignment |
| Proteins | 334 | Fasta | Multiple protein sequence alignment by MUSCLE online |
| ICEs | 4 | Fasta | Nucleotide sequence comparison by webACT |
| (1) Eppinger M et al. (2007). The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever. PLoS Genet. 3(8):e142. [PudMed:17784789] |
| (2) Thomson NR et al. (2006). The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081. PLoS Genet. 2(12):e206. [PudMed:17173484] |
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(3) Collyn F et al. (2004). YAPI, a new Yersinia pseudotuberculosis pathogenicity island. Infect Immun. 72(8):4784-90. [PudMed:15271940]
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(4) Collyn F et al. (2002). Yersinia pseudotuberculosis harbors a type IV pilus gene cluster that contributes to pathogenicity. Infect Immun. 70(11):6196-205. [PudMed:12379698]
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| experimental literature |