ICEberg

ICE
Gene list
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References

I. Information of ICE

ICEberg ID	407
Name	YAPI(IP31758)
Organism	Yersinia pseudotuberculosis IP 31758
Size (bp)	64694
GC content [Genome] (%)	47.98[47.54]
Insertion site	tRNA-Phe
Function	Pathogenicity
Species that ICE can be transferred to	-
Nucleotide Sequence	CP000720 (complete ICE sequence in this genome)
Replicon	chromosome (4723306 bp, BioProject:16070) [NC_009708]
Genome coordinates	4157207..4221900
Putative oriT region	-
Putative relaxase	coordinates: 4158523..4159719; Locus tag: YpsIP31758_3687; Family: MOB_H

II. ICE interaction with IME/CIME/

The interaction information of YAPI(IP31758) is not available.

The graph information of YAPI(IP31758) components from CP000720

Complete gene list of YAPI(IP31758) from CP000720
#	Gene	Coordinates [+/-], size (bp)	Product (GenBank annotation)	*Reannotation
1	YpsIP31758_3683	4153449..4154006 [-], 558	iron-sulfur cluster-binding protein
2	YpsIP31758_3684	4154029..4156044 [-], 2016	putative anaerobic formate dehydrogenase, iron-sulfur subunit
3	YpsIP31758_3685	4156464..4157039 [+], 576	transcriptional regulator, TetR family
4	YpsIP31758_3686	4157513..4158481 [-], 969	putative phage integrase	Integrase
5	YpsIP31758_3687	4158523..4159719 [-], 1197	putative helicase	Relaxase, MOB_H Family
6	YpsIP31758_3688	4159911..4160558 [+], 648	conserved domain protein
7	YpsIP31758_3689	4160572..4161477 [-], 906	conserved hypothetical protein
8	YpsIP31758_3690	4161587..4162558 [-], 972	antirestriction protein
9	YpsIP31758_3691	4163226..4163657 [+], 432	conserved hypothetical protein
10	YpsIP31758_3692	4163688..4167947 [+], 4260	RHS/YD repeat protein
11	YpsIP31758_3693	4167963..4168580 [+], 618	conserved hypothetical protein
12	YpsIP31758_3694	4168820..4169257 [+], 438	hypothetical protein
13	YpsIP31758_3695	4169387..4169941 [+], 555	conserved hypothetical protein
14	YpsIP31758_3696	4170053..4170577 [+], 525	conserved hypothetical protein
15	YpsIP31758_3697	4170921..4171811 [-], 891	conserved hypothetical protein
16	YpsIP31758_3698	4172940..4173236 [+], 297	conserved domain protein	Tfc20, T4SS component
17	YpsIP31758_3699	4173268..4174791 [-], 1524	putative membrane protein	Tfc19, T4SS component
18	YpsIP31758_3700	4174791..4176197 [-], 1407	conserved hypothetical protein	Tfc22, T4SS component
19	YpsIP31758_3701	4176218..4177171 [-], 954	conserved hypothetical protein	Tfc23, T4SS component
20	YpsIP31758_3702	4177168..4177572 [-], 405	conserved hypothetical protein	Tfc24, T4SS component
21	YpsIP31758_3703	4178309..4180441 [+], 2133	conserved hypothetical protein
22	YpsIP31758_3704	4181327..4182028 [+], 702	putative lipoprotein
23	YpsIP31758_3705	4182460..4185306 [-], 2847	conserved hypothetical protein	Tfc16, T4SS component
24	YpsIP31758_3706	4185306..4185707 [-], 402	putative lipoprotein	Tfc15, T4SS component
25	YpsIP31758_3707	4185720..4187237 [-], 1518	conserved hypothetical protein	Tfc14, T4SS component
26	YpsIP31758_3708	4187234..4188100 [-], 867	conserved hypothetical protein	Tfc13, T4SS component
27	YpsIP31758_3709	4188097..4188750 [-], 654	conserved hypothetical protein	Tfc12, T4SS component
28	YpsIP31758_3710	4188747..4189121 [-], 375	conserved hypothetical protein	Tfc11, T4SS component
29	YpsIP31758_3711	4189131..4189481 [-], 351	conserved hypothetical protein	Tfc10, T4SS component
30	YpsIP31758_3712	4189497..4189742 [-], 246	hypothetical protein
31	YpsIP31758_3713	4189742..4190050 [-], 309	plasmid conserved hypothetical protein, RAQPRD family	Tfc9, T4SS component
32	YpsIP31758_3714	4190571..4191458 [-], 888	hypothetical protein
33	YpsIP31758_3715	4191576..4193381 [-], 1806	conserved hypothetical protein
34	YpsIP31758_3716	4193378..4194616 [-], 1239	conserved hypothetical protein
35	YpsIP31758_3717	4194737..4195489 [-], 753	conserved hypothetical protein	Tfc8, T4SS component
36	YpsIP31758_3718	4195489..4197609 [-], 2121	conserved hypothetical protein	Tfc6, T4SS component
37	YpsIP31758_3719	4197668..4198189 [-], 522	conserved hypothetical protein	Tfc5, T4SS component
38	YpsIP31758_3720	4198186..4198824 [-], 639	transglycosylase SLT domain protein	Tfc4, T4SS component
39	YpsIP31758_3721	4198803..4199621 [-], 819	conserved hypothetical protein	Tfc3, T4SS component
40	YpsIP31758_3722	4199713..4200045 [-], 333	conserved hypothetical protein
41	YpsIP31758_3723	4200035..4200241 [-], 207	hypothetical protein
42	YpsIP31758_3724	4200453..4200809 [+], 357	DNA binding protein
43	YpsIP31758_3725	4200871..4201002 [+], 132	hypothetical protein
44	YpsIP31758_3726	4201125..4202057 [-], 933	putative transposase
45	YpsIP31758_3727	4202151..4203428 [-], 1278	bacterial shufflon protein
46	YpsIP31758_3728	4203432..4204100 [-], 669	type IV prepilin peptidase
47	pilS	4204097..4204684 [-], 588	type IV pilus biogenesis protein
48	pilR	4204699..4205799 [-], 1101	type IV pilus biogenesis protein PilR
49	YpsIP31758_3731	4205801..4207354 [-], 1554	type IV secretion system protein	TraJ_I, T4SS component
50	pilP1	4207364..4207858 [-], 495	type IV pilus biogenesis protein PilP
51	YpsIP31758_3733	4207845..4209182 [-], 1338	pilin accessory protein PilO
52	YpsIP31758_3734	4209185..4210777 [-], 1593	type IVB pilus formation outer membrane protein, R64 PilN family
53	YpsIP31758_3735	4210791..4211228 [-], 438	PilM protein
54	YpsIP31758_3736	4211230..4212300 [-], 1071	pilus biogenesis protein	Tfc2, T4SS component
55	YpsIP31758_3737	4212438..4212824 [-], 387	PIN domain protein
56	YpsIP31758_3738	4212821..4213054 [-], 234	prevent-host-death family protein
57	YpsIP31758_3739	4213225..4213656 [-], 432	conserved hypothetical protein
58	YpsIP31758_3740	4213859..4214401 [-], 543	conserved hypothetical protein
59	YpsIP31758_3741	4214398..4214517 [-], 120	hypothetical protein
60	YpsIP31758_3742	4214702..4215460 [-], 759	conserved hypothetical protein
61	YpsIP31758_3743	4215620..4216819 [-], 1200	conserved hypothetical protein
62	YpsIP31758_3744	4217055..4217216 [-], 162	conserved hypothetical protein
63	YpsIP31758_3745	4217285..4217866 [-], 582	conserved hypothetical protein
64	YpsIP31758_3746	4217863..4219509 [-], 1647	conserved hypothetical protein
65	dnaB2	4219538..4220899 [-], 1362	replicative DNA helicase
66	YpsIP31758_3748	4220892..4221773 [-], 882	conserved hypothetical protein
67	YpsIP31758_3749	4222334..4224904 [-], 2571	viral enhancin protein
68	YpsIP31758_3750	4224919..4225086 [-], 168	conserved hypothetical protein
69	YpsIP31758_3751	4225316..4225741 [+], 426	conserved hypothetical protein

Flanking regions

Element	No. of sequences	Download
Nucleotide sequences	1	Fasta
Proteins	63	Fasta

(1) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PubMed:22247511]

(2) Eppinger M; Rosovitz MJ; Fricke WF; Rasko DA; Kokorina G; Fayolle C; Lindler LE; Carniel E; Ravel J (2007). The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever. PLoS Genet. 3(8):e142. [PubMed:17784789]

in silico analysis literature