ICEberg
I. Information of ICE
ICEberg ID405
Name YAPI(ye) This is a predicted ICE derived from literature
OrganismYersinia enterocolitica subsp. enterocolitica 8081
Size (bp)66144
GC content [Genome] (%)47.96[47.27]
Insertion sitetRNA-Phe(YE3450)
Functionencodes a possible hemolysin (YE3454), a toxin/antitoxin system (YE3480 and YE3481), and an arsenic-resistance operon (YE3472-YE3475)
Species that ICE can be transferred to-
Nucleotide SequenceAM286415 (complete ICE sequence in this genome)
Replicon chromosome (4615899 bp, BioProject:190) [NC_008800]
Genome coordinates3761945..3828088 
Putative oriT region -
Putative relaxase coordinates: 3763267..3764463; Locus tag: YE3451;  Family:  MOBH


II. ICE interaction with IME/CIME/

The interaction information of YAPI(ye) is not available.



The graph information of YAPI(ye) components from AM286415
Complete gene list of YAPI(ye) from AM286415
#Gene Coordinates [+/-], size (bp) Product 
(GenBank annotation)		 *Reannotation 
1mltC3757024..3758112 [+], 1089membrane-bound lytic murein transglycosylase C
2YE34463758283..3759032 [+], 750putative membrane protein
3speC3759101..3761263 [-], 2163ornithine decarboxylase
4YE34503762254..3763237 [-], 984phage integraseIntegrase 
5YE34513763267..3764463 [-], 1197conserved hypothetical proteinRelaxase, MOBH Family
6YE34523764827..3765171 [+], 345hypothetical protein
7YE34533765220..3765561 [-], 342hypothetical protein
8YE34543765558..3767960 [-], 2403putative hemolysin
9YE34553768387..3768686 [+], 300transposase for IS3-like insertion sequence (pseudogene)
10YE34563768683..3768922 [+], 240transposase for IS3-like insertion sequence (pseudogene)
11YE34573769251..3769835 [+], 585putative membrane protein
12YE34583769900..3770802 [-], 903conserved hypothetical protein
13YE34593770903..3771190 [-], 288hypothetical protein
14YE34603771187..3772188 [-], 1002hypothetical protein
15YE34613772593..3773480 [-], 888putative phage integrase
16YE34623775095..3776192 [+], 1098hypothetical protein
17YE34633776189..3777172 [+], 984hypothetical protein
18YE34643777495..3777758 [+], 264hypothetical proteinTfc20, T4SS component 
19YE34653777818..3779338 [-], 1521putative membrane proteinTfc19, T4SS component 
20YE34663779338..3780744 [-], 1407putative exported proteinTfc22, T4SS component 
21YE34673780765..3781718 [-], 954putative exported proteinTfc23, T4SS component 
22YE34683781715..3782068 [-], 354hypothetical proteinTfc24, T4SS component 
23arsR23783946..3784299 [+], 354arsenical resistance operon repressor
24arsD3784346..3784708 [+], 363arsenical resistance operon trans-acting repressor
25arsA23784726..3786477 [+], 1752arsenical pump-driving ATPase
26arsB23786526..3787815 [+], 1290arsenical pump membrane protein
27arsC23787828..3788253 [+], 426arsenate reductase
28tpn13303788299..3789492 [-], 1194transposase for IS1330
29arsH3789694..3790404 [-], 711putative arsenic resistance protein
30YE34783790536..3790829 [-], 294conserved hypothetical protein
31YE34793790936..3792069 [+], 1134putative membrane transport protein
32ccdB3792208..3792522 [-], 315cytotoxic protein
33ccdA3792525..3792761 [-], 237gyrase inhibitor antitoxin
34YE34823793238..3795880 [-], 2643Conserved hypothetical proteinTfc16, T4SS component 
35YE34833796042..3796446 [-], 405putative lipoproteinTfc15, T4SS component 
36YE34843796456..3797913 [-], 1458conserved hypothetical proteinTfc14, T4SS component 
37YE34853797961..3798827 [-], 867putative exported proteinTfc13, T4SS component 
38YE34863798824..3799477 [-], 654putative membrane proteinTfc12, T4SS component 
39YE34873799474..3799848 [-], 375putative inner membrane proteinTfc11, T4SS component 
40YE34883799858..3800208 [-], 351putative exported proteinTfc10, T4SS component 
41YE34893800224..3800472 [-], 249putative membrane protein
42YE34903800469..3800777 [-], 309putative exported proteinTfc9, T4SS component 
43YE34923801682..3802434 [-], 753putative inner membrane proteinTfc8, T4SS component 
44YE34933802434..3804554 [-], 2121TraG-family proteinTfc6, T4SS component 
45YE34943804740..3805234 [-], 495conserved hypothetical proteinTfc5, T4SS component 
46YE3494A3805258..3805806 [-], 549conserved hypothetical proteinTfc4, T4SS component 
47YE34953805875..3806642 [-], 768putative membrane proteinTfc3, T4SS component 
48YE3495A3806785..3807132 [-], 348hypothetical protein
49YE34963807111..3807365 [-], 255hypothetical protein
50YE3496A3807520..3807876 [+], 357putative DNA-binding protein
51YE34973808031..3808951 [-], 921putative transposase
52YE34983809045..3810322 [-], 1278putative type IV pilus protein
53YE34993810326..3810994 [-], 669type IV prepilin peptidase
54YE35003810991..3811578 [-], 588putative type IV prepilin
55YE35013811593..3812702 [-], 1110type IV pilus integral membrane protein
56YE35023812695..3814248 [-], 1554putative type IV pilus protein
57YE3502A3814257..3814736 [-], 480putative type IV pilus protein
58YE35033814723..3816030 [-], 1308putative type IV pilus protein
59YE35043816033..3817721 [-], 1689putative type IV pilus operon lipoprotein
60YE35053817733..3818170 [-], 438putative type IV pilus operon exported poprotein
61YE35063818172..3819146 [-], 975putative type IV pilus operon lipoproteinTfc2, T4SS component 
62YE35073819341..3819772 [-], 432conserved hypothetical protein
63YE35083819884..3820201 [-], 318hypothetical protein
64YE35093820501..3821043 [-], 543hypothetical protein
65YE35103821333..3822091 [-], 759conserved hypothetical protein
66YE35113822260..3823462 [-], 1203conserved hypothetical protein
67YE35123823568..3824137 [-], 570conserved hypothetical protein
68YE35133824134..3825720 [-], 1587putative ATP/GTP binding protein
69dnaB23825720..3827087 [-], 1368putative DNA helicase
70YE35153827080..3827961 [-], 882conserved hypothetical protein
71YE35163828311..3829272 [-], 962putative integrase (pseudogene)
72YE35183829378..3829686 [-], 309putative exported protein
73YE35193829958..3830125 [+], 168hypothetical protein
74YE35203830294..3831526 [-], 1233conserved hypothetical protein
 
flank Flanking regions

ElementNo. of sequencesDownload
Nucleotide sequences1Fasta
Proteins65Fasta
(1) Seth-Smith HM; Fookes MC; Okoro CK; Baker S; Harris SR; Scott P; Pickard D; Quail MA; Churcher C; Sanders M; Harmse J; Dougan G; Parkhill J; Thomson NR (2012). Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae. J Bacteriol. 194(6):1494-504. [PubMed:22247511] in_silico
(2) Thomson NR; Howard S; Wren BW; Holden MT; Crossman L; Challis GL; Churcher C; Mungall K; Brooks K; Chillingworth T; Feltwell T; Abdellah Z; Hauser H; Jagels K; Maddison M; Moule S; Sanders M; Whitehead S; Quail MA; Dougan G; Parkhill J; Prentice MB (2006). The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081. PLoS Genet. 2(12):e206. [PubMed:17173484]
 
in_silico in silico analysis literature

Genomics & Bioinformatics Group in MML, SJTU