Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/COG4683-HTH_37
Location 3550339..3551009 Replicon chromosome
Accession NZ_CP025602
Organism Mycobacterium tuberculosis strain GG-109-10

Toxin (Protein)


Gene name higB Uniprot ID O53332
Locus tag C0096_RS17445 Protein ID WP_003899954.1
Coordinates 3550339..3550683 (+) Length 115 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID G0THF6
Locus tag C0096_RS17450 Protein ID WP_003899955.1
Coordinates 3550680..3551009 (+) Length 110 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C0096_RS17410 3545412..3546272 + 861 WP_003416628.1 alpha/beta hydrolase -
C0096_RS17415 3546247..3546762 + 516 WP_003899950.1 nitroreductase family deazaflavin-dependent oxidoreductase -
C0096_RS17425 3547002..3547295 + 294 WP_003416635.1 hypothetical protein -
C0096_RS17430 3547583..3548872 + 1290 WP_003906996.1 ATP-binding protein -
C0096_RS17435 3549219..3549653 - 435 WP_003899952.1 type II toxin-antitoxin system VapC family toxin -
C0096_RS17440 3549656..3550108 - 453 WP_003899953.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
C0096_RS17445 3550339..3550683 + 345 WP_003899954.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
C0096_RS17450 3550680..3551009 + 330 WP_003899955.1 XRE family transcriptional regulator Antitoxin
C0096_RS17455 3551246..3552507 + 1262 WP_087902221.1 IS3-like element IS987 family transposase -
C0096_RS17460 3552729..3553990 + 1262 WP_087902221.1 IS3-like element IS987 family transposase -
C0096_RS17465 3554263..3554610 + 348 WP_003899956.1 DUF2384 domain-containing protein -
C0096_RS17470 3554607..3555227 + 621 WP_003899957.1 RES family NAD+ phosphorylase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - - 3549656..3580460 30804


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(12-103)

Antitoxin

Cro/C1-type helix-turn-helix domain

(38-91)


Sequences

Toxin        


Download         Length: 115 a.a.        Molecular weight: 12692.50 Da        Isoelectric Point: 5.6920

>T91232 WP_003899954.1 NZ_CP025602:3550339-3550683 [Mycobacterium tuberculosis]
MAVILLPQVERWFFALNRDAMASVTGAIDLLEMEGPTLGRPVVDKVNDSTFHNMKELRPAGTSIRILFAFDPARQAILLL
GGDKAGNWKRWYDNNIPIADQRSENWLASEHGGG

Download         Length: 345 bp

>T91232 NZ_CP025602:3550339-3550683 [Mycobacterium tuberculosis]
TTGGCCGTGATCCTGCTCCCGCAGGTCGAACGGTGGTTCTTCGCGCTCAACAGGGATGCGATGGCCTCGGTCACCGGCGC
CATCGACCTGCTCGAAATGGAGGGGCCGACGTTGGGCCGCCCGGTGGTCGACAAAGTGAACGACTCAACGTTTCACAACA
TGAAGGAGCTGCGCCCCGCCGGCACCAGCATCCGGATCCTGTTCGCCTTCGACCCGGCCCGGCAGGCGATCCTGCTGCTG
GGCGGTGACAAGGCAGGCAACTGGAAACGCTGGTACGACAACAACATTCCAATCGCTGACCAGCGCTCCGAGAACTGGCT
GGCGAGCGAGCACGGAGGTGGATGA

Antitoxin


Download         Length: 110 a.a.        Molecular weight: 11802.46 Da        Isoelectric Point: 7.4051

>AT91232 WP_003899955.1 NZ_CP025602:3550680-3551009 [Mycobacterium tuberculosis]
MTMARNWRDIRADAVAQGRVDLQRAAVAREEMRDAVLAHRLAEIRKALGHARQADVAALMGVSQARVSKLESGDLSHTEL
GTLQAYVAALGGHLRIVAEFGENTVELTA

Download         Length: 330 bp

>AT91232 NZ_CP025602:3550680-3551009 [Mycobacterium tuberculosis]
ATGACCATGGCCCGCAACTGGCGTGACATTCGCGCCGATGCCGTCGCGCAGGGCCGCGTGGATCTGCAGCGGGCCGCCGT
GGCACGCGAGGAGATGCGCGATGCCGTCCTGGCGCACCGCCTGGCCGAGATCCGCAAGGCGCTAGGCCACGCACGTCAGG
CCGACGTCGCGGCGCTGATGGGGGTCTCTCAGGCCCGTGTCTCCAAGCTGGAGAGCGGCGACCTGTCCCACACCGAACTC
GGCACCCTGCAGGCCTACGTTGCCGCCCTGGGCGGGCACCTGCGCATCGTCGCTGAGTTCGGCGAAAATACTGTCGAGCT
GACCGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4FBK2

Antitoxin

Source ID Structure
PDB 6LTY
PDB 6LTZ
AlphaFold DB G0THF6

References