89206

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Txe-RelB
Location 2676792..2677198 Replicon chromosome
Accession NZ_CP024901
Organism Photorhabdus laumondii subsp. laumondii strain TT01

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PluTT01m_RS11800 Protein ID WP_071824109.1
Coordinates 2676792..2676884 (-) Length 31 a.a.

Antitoxin (Protein)


Gene name relE Uniprot ID -
Locus tag PluTT01m_RS11805 Protein ID WP_011146529.1
Coordinates 2676944..2677198 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PluTT01m_RS11775 2673062..2674381 + 1320 WP_011146524.1 xylose isomerase -
PluTT01m_RS11780 2674801..2675373 + 573 WP_011146525.1 hypothetical protein -
PluTT01m_RS11785 2675665..2676039 + 375 WP_041380079.1 VOC family protein -
PluTT01m_RS11790 2676127..2676366 + 240 WP_011146527.1 type II toxin-antitoxin system CcdA family antitoxin -
PluTT01m_RS11795 2676368..2676673 + 306 WP_011146528.1 CcdB family protein -
PluTT01m_RS11800 2676792..2676884 - 93 WP_071824109.1 type II toxin-antitoxin system YoeB family toxin Toxin
PluTT01m_RS11805 2676944..2677198 - 255 WP_011146529.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
PluTT01m_RS11810 2677254..2677712 - 459 WP_011146530.1 Exc2 family lipoprotein -
PluTT01m_RS11815 2677694..2678662 - 969 WP_011145223.1 IS30-like element ISPlu1 family transposase -
PluTT01m_RS11820 2678805..2679005 - 201 WP_011146531.1 DUF1778 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
flank IS/Tn - - 2677694..2678662 968


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(1-28)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 31 a.a.        Molecular weight: 3720.27 Da        Isoelectric Point: 9.7449

>T89206 WP_071824109.1 NZ_CP024901:c2676884-2676792 [Photorhabdus laumondii subsp. laumondii]
MSGYWSRRINREHRLVYKVTDDAIIIVQHY

Download         Length: 93 bp

>T89206 NZ_CP024901:c2676884-2676792 [Photorhabdus laumondii subsp. laumondii]
TTGTCGGGTTATTGGTCTAGACGTATTAATCGAGAGCATCGTCTGGTTTACAAGGTAACAGATGATGCAATCATTATCGT
GCAGCACTATTAA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9422.72 Da        Isoelectric Point: 6.4794

>AT89206 WP_011146529.1 NZ_CP024901:c2677198-2676944 [Photorhabdus laumondii subsp. laumondii]
MDTINYSAFRTHFASPLDKVNDNHKPILITHQNGKPAIALRLEDFQAYEETAYLMASPKNAAHLNQAIAEVEAGRMIEKG
LLKE

Download         Length: 255 bp

>AT89206 NZ_CP024901:c2677198-2676944 [Photorhabdus laumondii subsp. laumondii]
ATGGACACAATAAACTATTCAGCATTTAGAACTCACTTCGCCAGCCCCTTAGATAAAGTGAACGACAATCACAAGCCAAT
TCTGATTACTCATCAGAATGGCAAGCCAGCGATCGCCCTACGTTTGGAAGATTTTCAAGCCTACGAAGAAACAGCCTATT
TAATGGCTAGCCCGAAAAACGCGGCACATTTAAATCAGGCAATTGCTGAAGTGGAAGCAGGGAGAATGATTGAAAAAGGG
CTATTGAAAGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References