Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/ParE-RelB |
Location | 1620628..1621154 | Replicon | chromosome |
Accession | NZ_CP008801 | ||
Organism | Escherichia coli KLY |
Toxin (Protein)
Gene name | relE | Uniprot ID | S1EXL1 |
Locus tag | HQ24_RS08050 | Protein ID | WP_000323025.1 |
Coordinates | 1620628..1620915 (-) | Length | 96 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | S1F6D3 |
Locus tag | HQ24_RS08055 | Protein ID | WP_000534858.1 |
Coordinates | 1620915..1621154 (-) | Length | 80 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HQ24_RS08010 | 1615652..1615867 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
HQ24_RS08015 | 1616621..1616836 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
HQ24_RS08020 | 1617137..1617349 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
HQ24_RS26190 | 1617404..1617493 | + | 90 | WP_120795389.1 | hypothetical protein | - |
HQ24_RS08025 | 1617771..1618523 | - | 753 | WP_001047135.1 | antitermination protein | - |
HQ24_RS08030 | 1618537..1619586 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
HQ24_RS08035 | 1619588..1619866 | - | 279 | WP_012304870.1 | hypothetical protein | - |
HQ24_RS08040 | 1619933..1620184 | - | 252 | WP_000980994.1 | hypothetical protein | - |
HQ24_RS08045 | 1620401..1620556 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
HQ24_RS08050 | 1620628..1620915 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
HQ24_RS08055 | 1620915..1621154 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
HQ24_RS24280 | 1621179..1621484 | + | 306 | WP_001326990.1 | hypothetical protein | - |
HQ24_RS08060 | 1621687..1622019 | + | 333 | WP_001301033.1 | protein FlxA | - |
HQ24_RS23555 | 1622456..1622605 | - | 150 | WP_011443592.1 | hypothetical protein | - |
HQ24_RS08065 | 1622640..1622918 | - | 279 | Protein_1541 | hypothetical protein | - |
HQ24_RS08070 | 1622902..1623132 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
HQ24_RS08075 | 1623216..1623623 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
HQ24_RS08080 | 1623790..1623945 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
HQ24_RS08085 | 1624105..1624323 | + | 219 | WP_001171942.1 | hypothetical protein | - |
HQ24_RS08095 | 1624891..1625079 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
HQ24_RS08100 | 1625076..1625267 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
HQ24_RS24295 | 1625360..1626127 | + | 768 | Protein_1548 | exonuclease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
inside | Prophage | - | - | 1603634..1629197 | 25563 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T47503 WP_000323025.1 NZ_CP008801:c1620915-1620628 [Escherichia coli KLY]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T47503 NZ_CP008801:c1620915-1620628 [Escherichia coli KLY]
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
ATGGCGTATTTTCTGGATTTTGACGAGCGGGCACTAAAGGAATGGCGAAAGCTGGGCTCGACGGTACGTGAACAGTTGAA
AAAGAAGCTGGTTGAAGTACTTGAGTCACCCCGGATTGAAGCAAACAAGCTCCGTGGTATGCCTGATTGTTACAAGATTA
AGCTCCGGTCTTCAGGCTATCGCCTTGTATACCAGGTTATAGACGAGAAAGTTGTCGTTTTCGTGATTTCTGTTGGGAAA
AGAGAACGCTCGGAAGTATATAGCGAGGCGGTCAAACGCATTCTCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT47503 WP_000534858.1 NZ_CP008801:c1621154-1620915 [Escherichia coli KLY]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT47503 NZ_CP008801:c1621154-1620915 [Escherichia coli KLY]
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
ATGGGTAGCATTAACCTGCGTATTGACGATGAACTTAAAGCGCGTTCTTACGCCGCGCTTGAAAAAATGGGTGTAACTCC
TTCTGAAGCGCTTCGTCTCATGCTCGAGTATATCGCTGACAATGAACGCTTGCCGTTCAAACAGACACTCCTGAGTGATG
AAGATGCTGAACTTGTGGAGATAGTGAAAGAACGGCTTCGTAATCCTAAGCCAGTACGTGTGACGCTGGATGAACTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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