Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 176857..177383 | Replicon | chromosome |
| Accession | NZ_CP122317 | ||
| Organism | Escherichia coli strain HT-948 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | QCG49_RS00860 | Protein ID | WP_000323025.1 |
| Coordinates | 176857..177144 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | QCG49_RS00865 | Protein ID | WP_000534858.1 |
| Coordinates | 177144..177383 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG49_RS00810 (171881) | 171881..172096 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| QCG49_RS00815 (172316) | 172316..172486 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| QCG49_RS00820 (172850) | 172850..173065 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| QCG49_RS00825 (173366) | 173366..173578 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| QCG49_RS00830 (173633) | 173633..173722 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| QCG49_RS00835 (174000) | 174000..174752 | - | 753 | WP_001047135.1 | antitermination protein | - |
| QCG49_RS00840 (174766) | 174766..175815 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| QCG49_RS00845 (175817) | 175817..176095 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| QCG49_RS00850 (176162) | 176162..176413 | - | 252 | WP_000980994.1 | protein Rem | - |
| QCG49_RS00855 (176630) | 176630..176785 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| QCG49_RS00860 (176857) | 176857..177144 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| QCG49_RS00865 (177144) | 177144..177383 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| QCG49_RS00870 (177408) | 177408..177713 | + | 306 | WP_001326990.1 | protein YdfV | - |
| QCG49_RS00875 (177916) | 177916..178248 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| QCG49_RS00880 (178685) | 178685..178834 | - | 150 | WP_011443592.1 | protein YdfW | - |
| QCG49_RS00885 (178869) | 178869..179147 | - | 279 | Protein_176 | protein YdfX | - |
| QCG49_RS00890 (179131) | 179131..179361 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| QCG49_RS00895 (179445) | 179445..179852 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| QCG49_RS00900 (180019) | 180019..180174 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| QCG49_RS00905 (180176) | 180176..180304 | + | 129 | WP_000344964.1 | protein YdfB | - |
| QCG49_RS00910 (180334) | 180334..180552 | + | 219 | WP_001171942.1 | protein YdfC | - |
| QCG49_RS00915 (181120) | 181120..181308 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| QCG49_RS00920 (181305) | 181305..181496 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| QCG49_RS00925 (181589) | 181589..182356 | + | 768 | Protein_184 | exonuclease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 162513..184219 | 21706 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|