Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 13545..14071 | Replicon | chromosome |
| Accession | NZ_CP117962 | ||
| Organism | Escherichia coli strain JM109 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | PT299_RS01325 | Protein ID | WP_000323025.1 |
| Coordinates | 13784..14071 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | PT299_RS01320 | Protein ID | WP_000534858.1 |
| Coordinates | 13545..13784 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT299_RS01260 (8572) | 8572..9339 | - | 768 | Protein_10 | exonuclease | - |
| PT299_RS01265 (9432) | 9432..9623 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| PT299_RS01270 (9620) | 9620..9808 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| PT299_RS01275 (10376) | 10376..10594 | - | 219 | WP_001171942.1 | protein YdfC | - |
| PT299_RS01280 (10624) | 10624..10752 | - | 129 | WP_000344964.1 | protein YdfB | - |
| PT299_RS01285 (10754) | 10754..10909 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| PT299_RS01290 (11076) | 11076..11483 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| PT299_RS01295 (11567) | 11567..11797 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| PT299_RS01300 (11781) | 11781..12059 | + | 279 | Protein_18 | protein YdfX | - |
| PT299_RS01305 (12094) | 12094..12243 | + | 150 | WP_011443592.1 | protein YdfW | - |
| PT299_RS01310 (12680) | 12680..13012 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| PT299_RS01315 (13215) | 13215..13520 | - | 306 | WP_001326990.1 | protein YdfV | - |
| PT299_RS01320 (13545) | 13545..13784 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| PT299_RS01325 (13784) | 13784..14071 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| PT299_RS01330 (14143) | 14143..14298 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| PT299_RS01335 (14515) | 14515..14766 | + | 252 | WP_000980994.1 | protein Rem | - |
| PT299_RS01340 (14833) | 14833..15111 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| PT299_RS01345 (15113) | 15113..16162 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| PT299_RS01350 (16176) | 16176..16928 | + | 753 | WP_001047135.1 | antitermination protein | - |
| PT299_RS01355 (17206) | 17206..17295 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| PT299_RS01360 (17350) | 17350..17562 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| PT299_RS01365 (17863) | 17863..18078 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| PT299_RS01370 (18442) | 18442..18612 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| PT299_RS01375 (18832) | 18832..19047 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 6709..30202 | 23493 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|