Detailed information of TA system TA271007

Bioinformatically predicted

Overview

TA module

• Type: I
• Classification (family/domain): IasE-IsrA/SymE(toxin)
• Location: 3690766..3691116
• Replicon: chromosome
• Accession: NZ_CP117384
• Organism: Salmonella enterica subsp. enterica serovar Uganda strain RM013

Toxin (Protein)

• Gene name: IasE
• Uniprot ID: A0A3X9ZUV0
• Locus tag: PQP89_RS18265
• Protein ID: WP_000994229.1
• Coordinates: 3690859..3691116 (+)
• Length: 86 a.a.

Antitoxin (RNA)

Gene name	IsrA
Locus tag	-
Coordinates	3690766..3691034 (-)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
PQP89_RS18235	3685878..3686255	-	378	WP_000739707.1	Imm8 family immunity protein	-
PQP89_RS18240	3686988..3687353	-	366	WP_001231281.1	hypothetical protein	-
PQP89_RS18245	3687319..3688665	-	1347	Protein_3569	RHS repeat-associated core domain-containing protein	-
PQP89_RS18250	3688727..3688984	+	258	WP_000994229.1	SymE family type I addiction module toxin	-
PQP89_RS18255	3689048..3689386	-	339	WP_000382983.1	hypothetical protein	-
PQP89_RS18260	3689757..3690797	-	1041	Protein_3572	RHS repeat-associated core domain-containing protein	-
-	3690766..3691034	-	269	-	-	Antitoxin
PQP89_RS18265	3690859..3691116	+	258	WP_000994229.1	SymE family type I addiction module toxin	Toxin
PQP89_RS18270	3691180..3691518	-	339	WP_000382983.1	hypothetical protein	-
PQP89_RS18275	3691889..3693646	-	1758	Protein_3575	RHS repeat domain-containing protein	-
PQP89_RS18280	3693851..3694084	+	234	WP_000035941.1	hypothetical protein	-
PQP89_RS18285	3694156..3694503	-	348	WP_000887296.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Genomic island	-	-	3665186..3694527	29341

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin SymE-like (14-56)

Sequences

Toxin

Protein

• Length: 86 a.a.
• Molecular weight: 9538.91 Da
• Isoelectric Point: 7.2759

>T271007 WP_000994229.1 NZ_CP117384:3690859-3691116 [Salmonella enterica subsp. enterica serovar Uganda]
MNASGVSVRHINSKTHMTTYYSQIPSLHLKGDWLEEAGFETGRGVTVKISQGCIVLMADSNEEQKLREQLYKAEQVVKGM
RDVIV

Nucleotide

• Length: 258 bp

Antitoxin

Nucleotide

• Length: 269 bp

>AT271007 NZ_CP117384:c3691034-3690766 [Salmonella enterica subsp. enterica serovar Uganda]
TCCGCCATCAGCACAATACACCCCTGTGAAATCTTCACGGTCACGCCGCGCCCGGTCTCAAATCCCGCTTCTTCCAGCCA
GTCACCCTTAAGGTGCAGGCTGGGGATTTGTGAGTAATAGGTGGTCATGTGGGTTTTGCTGTTGATGTGGCGGACGCTGA
CGCCGGAGGCATTCATATTTGCTGACTAAATAAATTCTTAATTATCCGCCGGATGCTGGCTGATTGTGGAGCTCAGGGTG
AGCGAGTATGAGCGCGACAGCCTGCACCG

Structures

Toxin

• AlphaFold DB: A0A3X9ZUV0

Antitoxin