Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 996886..997412 | Replicon | chromosome |
| Accession | NZ_CP114894 | ||
| Organism | Escherichia coli strain CM19 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | O6X69_RS04980 | Protein ID | WP_000323025.1 |
| Coordinates | 996886..997173 (-) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | O6X69_RS04985 | Protein ID | WP_000534858.1 |
| Coordinates | 997173..997412 (-) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6X69_RS04930 (991910) | 991910..992125 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| O6X69_RS04935 (992345) | 992345..992515 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| O6X69_RS04940 (992879) | 992879..993094 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| O6X69_RS04945 (993395) | 993395..993607 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| O6X69_RS04950 (993662) | 993662..993751 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| O6X69_RS04955 (994029) | 994029..994781 | - | 753 | WP_001047135.1 | antitermination protein | - |
| O6X69_RS04960 (994795) | 994795..995844 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| O6X69_RS04965 (995846) | 995846..996124 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| O6X69_RS04970 (996191) | 996191..996442 | - | 252 | WP_000980994.1 | protein Rem | - |
| O6X69_RS04975 (996659) | 996659..996814 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| O6X69_RS04980 (996886) | 996886..997173 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| O6X69_RS04985 (997173) | 997173..997412 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| O6X69_RS04990 (997437) | 997437..997742 | + | 306 | WP_001326990.1 | protein YdfV | - |
| O6X69_RS04995 (997945) | 997945..998277 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| O6X69_RS05000 (998714) | 998714..998863 | - | 150 | WP_011443592.1 | protein YdfW | - |
| O6X69_RS05005 (998898) | 998898..999176 | - | 279 | Protein_973 | protein YdfX | - |
| O6X69_RS05010 (999160) | 999160..999390 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| O6X69_RS05015 (999474) | 999474..999881 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| O6X69_RS05020 (1000048) | 1000048..1000203 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| O6X69_RS05025 (1000205) | 1000205..1000333 | + | 129 | WP_000344964.1 | protein YdfB | - |
| O6X69_RS05030 (1000363) | 1000363..1000581 | + | 219 | WP_001171942.1 | protein YdfC | - |
| O6X69_RS05035 (1001149) | 1001149..1001337 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| O6X69_RS05040 (1001334) | 1001334..1001525 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| O6X69_RS05045 (1001618) | 1001618..1002385 | + | 768 | Protein_981 | exonuclease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 982542..1005584 | 23042 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|