Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2245596..2246122 | Replicon | chromosome |
| Accession | NZ_CP110859 | ||
| Organism | Escherichia coli strain TSW4881-W1 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | OQ464_RS10875 | Protein ID | WP_000323025.1 |
| Coordinates | 2245835..2246122 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | OQ464_RS10870 | Protein ID | WP_000534858.1 |
| Coordinates | 2245596..2245835 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OQ464_RS10810 (2240623) | 2240623..2241390 | - | 768 | Protein_2113 | exonuclease | - |
| OQ464_RS10815 (2241483) | 2241483..2241674 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| OQ464_RS10820 (2241671) | 2241671..2241859 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| OQ464_RS10825 (2242427) | 2242427..2242645 | - | 219 | WP_001171942.1 | protein YdfC | - |
| OQ464_RS10830 (2242675) | 2242675..2242803 | - | 129 | WP_000344964.1 | protein YdfB | - |
| OQ464_RS10835 (2242805) | 2242805..2242960 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| OQ464_RS10840 (2243127) | 2243127..2243534 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| OQ464_RS10845 (2243618) | 2243618..2243848 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| OQ464_RS10850 (2243832) | 2243832..2244110 | + | 279 | Protein_2121 | hypothetical protein | - |
| OQ464_RS10855 (2244145) | 2244145..2244294 | + | 150 | WP_011443592.1 | protein YdfW | - |
| OQ464_RS10860 (2244731) | 2244731..2245063 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| OQ464_RS10865 (2245266) | 2245266..2245571 | - | 306 | WP_001326990.1 | protein YdfV | - |
| OQ464_RS10870 (2245596) | 2245596..2245835 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| OQ464_RS10875 (2245835) | 2245835..2246122 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| OQ464_RS10880 (2246194) | 2246194..2246349 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| OQ464_RS10885 (2246566) | 2246566..2246817 | + | 252 | WP_000980994.1 | protein Rem | - |
| OQ464_RS10890 (2246884) | 2246884..2247162 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| OQ464_RS10895 (2247164) | 2247164..2248213 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| OQ464_RS10900 (2248227) | 2248227..2248979 | + | 753 | WP_001047135.1 | antitermination protein | - |
| OQ464_RS10905 (2249257) | 2249257..2249346 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| OQ464_RS10910 (2249401) | 2249401..2249613 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| OQ464_RS10915 (2249914) | 2249914..2250129 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| OQ464_RS10920 (2250493) | 2250493..2250663 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| OQ464_RS10925 (2250883) | 2250883..2251098 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 2237424..2260466 | 23042 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|