Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2233699..2234225 | Replicon | chromosome |
| Accession | NZ_CP110814 | ||
| Organism | Escherichia coli strain THB42-F4 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | N0552_RS10800 | Protein ID | WP_000323025.1 |
| Coordinates | 2233938..2234225 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | N0552_RS10795 | Protein ID | WP_000534858.1 |
| Coordinates | 2233699..2233938 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0552_RS10735 (2228726) | 2228726..2229493 | - | 768 | Protein_2095 | exonuclease | - |
| N0552_RS10740 (2229586) | 2229586..2229777 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| N0552_RS10745 (2229774) | 2229774..2229962 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| N0552_RS10750 (2230530) | 2230530..2230748 | - | 219 | WP_001171942.1 | protein YdfC | - |
| N0552_RS10755 (2230778) | 2230778..2230906 | - | 129 | WP_000344964.1 | protein YdfB | - |
| N0552_RS10760 (2230908) | 2230908..2231063 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| N0552_RS10765 (2231230) | 2231230..2231637 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| N0552_RS10770 (2231721) | 2231721..2231951 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| N0552_RS10775 (2231935) | 2231935..2232213 | + | 279 | Protein_2103 | hypothetical protein | - |
| N0552_RS10780 (2232248) | 2232248..2232397 | + | 150 | WP_011443592.1 | protein YdfW | - |
| N0552_RS10785 (2232834) | 2232834..2233166 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| N0552_RS10790 (2233369) | 2233369..2233674 | - | 306 | WP_001326990.1 | protein YdfV | - |
| N0552_RS10795 (2233699) | 2233699..2233938 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| N0552_RS10800 (2233938) | 2233938..2234225 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| N0552_RS10805 (2234297) | 2234297..2234452 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| N0552_RS10810 (2234669) | 2234669..2234920 | + | 252 | WP_000980994.1 | protein Rem | - |
| N0552_RS10815 (2234987) | 2234987..2235265 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| N0552_RS10820 (2235267) | 2235267..2236316 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| N0552_RS10825 (2236330) | 2236330..2237082 | + | 753 | WP_001047135.1 | antitermination protein | - |
| N0552_RS10830 (2237360) | 2237360..2237449 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| N0552_RS10835 (2237504) | 2237504..2237716 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| N0552_RS10840 (2238017) | 2238017..2238232 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| N0552_RS10845 (2238596) | 2238596..2238766 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| N0552_RS10850 (2238986) | 2238986..2239201 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 2226863..2248569 | 21706 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|