Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2233588..2234114 | Replicon | chromosome |
| Accession | NZ_CP104330 | ||
| Organism | Escherichia coli strain THB42-F3 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | N0544_RS10800 | Protein ID | WP_000323025.1 |
| Coordinates | 2233827..2234114 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | N0544_RS10795 | Protein ID | WP_000534858.1 |
| Coordinates | 2233588..2233827 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0544_RS10735 (2228615) | 2228615..2229382 | - | 768 | Protein_2095 | exonuclease | - |
| N0544_RS10740 (2229475) | 2229475..2229666 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| N0544_RS10745 (2229663) | 2229663..2229851 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| N0544_RS10750 (2230419) | 2230419..2230637 | - | 219 | WP_001171942.1 | protein YdfC | - |
| N0544_RS10755 (2230667) | 2230667..2230795 | - | 129 | WP_000344964.1 | protein YdfB | - |
| N0544_RS10760 (2230797) | 2230797..2230952 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| N0544_RS10765 (2231119) | 2231119..2231526 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| N0544_RS10770 (2231610) | 2231610..2231840 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| N0544_RS10775 (2231824) | 2231824..2232102 | + | 279 | Protein_2103 | hypothetical protein | - |
| N0544_RS10780 (2232137) | 2232137..2232286 | + | 150 | WP_011443592.1 | protein YdfW | - |
| N0544_RS10785 (2232723) | 2232723..2233055 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| N0544_RS10790 (2233258) | 2233258..2233563 | - | 306 | WP_001326990.1 | protein YdfV | - |
| N0544_RS10795 (2233588) | 2233588..2233827 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| N0544_RS10800 (2233827) | 2233827..2234114 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| N0544_RS10805 (2234186) | 2234186..2234341 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| N0544_RS10810 (2234558) | 2234558..2234809 | + | 252 | WP_000980994.1 | protein Rem | - |
| N0544_RS10815 (2234876) | 2234876..2235154 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| N0544_RS10820 (2235156) | 2235156..2236205 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| N0544_RS10825 (2236219) | 2236219..2236971 | + | 753 | WP_001047135.1 | antitermination protein | - |
| N0544_RS10830 (2237249) | 2237249..2237338 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| N0544_RS10835 (2237393) | 2237393..2237605 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| N0544_RS10840 (2237906) | 2237906..2238121 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| N0544_RS10845 (2238485) | 2238485..2238655 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| N0544_RS10850 (2238875) | 2238875..2239090 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 2226752..2250245 | 23493 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|