Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2233891..2234417 | Replicon | chromosome |
| Accession | NZ_CP104328 | ||
| Organism | Escherichia coli strain THB42-F2 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | N0499_RS10800 | Protein ID | WP_000323025.1 |
| Coordinates | 2234130..2234417 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | N0499_RS10795 | Protein ID | WP_000534858.1 |
| Coordinates | 2233891..2234130 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0499_RS10735 (2228918) | 2228918..2229685 | - | 768 | Protein_2095 | exonuclease | - |
| N0499_RS10740 (2229778) | 2229778..2229969 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| N0499_RS10745 (2229966) | 2229966..2230154 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| N0499_RS10750 (2230722) | 2230722..2230940 | - | 219 | WP_001171942.1 | protein YdfC | - |
| N0499_RS10755 (2230970) | 2230970..2231098 | - | 129 | WP_000344964.1 | protein YdfB | - |
| N0499_RS10760 (2231100) | 2231100..2231255 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| N0499_RS10765 (2231422) | 2231422..2231829 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| N0499_RS10770 (2231913) | 2231913..2232143 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| N0499_RS10775 (2232127) | 2232127..2232405 | + | 279 | Protein_2103 | hypothetical protein | - |
| N0499_RS10780 (2232440) | 2232440..2232589 | + | 150 | WP_011443592.1 | protein YdfW | - |
| N0499_RS10785 (2233026) | 2233026..2233358 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| N0499_RS10790 (2233561) | 2233561..2233866 | - | 306 | WP_001326990.1 | protein YdfV | - |
| N0499_RS10795 (2233891) | 2233891..2234130 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| N0499_RS10800 (2234130) | 2234130..2234417 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| N0499_RS10805 (2234489) | 2234489..2234644 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| N0499_RS10810 (2234861) | 2234861..2235112 | + | 252 | WP_000980994.1 | protein Rem | - |
| N0499_RS10815 (2235179) | 2235179..2235457 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| N0499_RS10820 (2235459) | 2235459..2236508 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| N0499_RS10825 (2236522) | 2236522..2237274 | + | 753 | WP_001047135.1 | antitermination protein | - |
| N0499_RS10830 (2237552) | 2237552..2237641 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| N0499_RS10835 (2237696) | 2237696..2237908 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| N0499_RS10840 (2238209) | 2238209..2238424 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| N0499_RS10845 (2238788) | 2238788..2238958 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| N0499_RS10850 (2239178) | 2239178..2239393 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| inside | Prophage | - | - | 2227055..2248761 | 21706 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|