Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type I Classification (family/domain) IasE-IsrA/SymE(toxin)
Location 3617754..3618168 Replicon chromosome
Accession NZ_CP089790
Organism Salmonella enterica subsp. enterica serovar Kentucky strain ZTA19/00830

Toxin (Protein)


Gene name IasE Uniprot ID A0A3V3U6I8
Locus tag LUY12_RS17670 Protein ID WP_023203422.1
Coordinates 3617911..3618168 (+) Length 86 a.a.

Antitoxin (RNA)


Gene name IsrA
Locus tag -
Coordinates 3617754..3618086 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LUY12_RS17640 3613011..3613508 - 498 WP_058654878.1 Saf-pilin pilus formation protein SafA -
LUY12_RS17645 3614269..3614973 - 705 Protein_3456 integrase core domain-containing protein -
LUY12_RS17650 3615026..3615262 + 237 Protein_3457 SymE family type I addiction module toxin -
LUY12_RS17655 3615407..3615685 - 279 WP_012664366.1 hypothetical protein -
LUY12_RS17660 3616003..3616470 - 468 WP_000828182.1 sugar tyrosine-protein kinase -
LUY12_RS17665 3616563..3616838 - 276 WP_223163371.1 hypothetical protein -
- 3617754..3618086 - 333 - - Antitoxin
LUY12_RS17670 3617911..3618168 + 258 WP_023203422.1 SymE family type I addiction module toxin Toxin
LUY12_RS17675 3618227..3618535 - 309 WP_023203423.1 hypothetical protein -
LUY12_RS17680 3618554..3618961 - 408 WP_024146273.1 DUF4329 domain-containing protein -
LUY12_RS17685 3619322..3619843 - 522 WP_023203424.1 SMI1/KNR4 family protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 3595781..3651745 55964
- flank IS/Tn - - 3614269..3614550 281


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(14-56)


Sequences


Toxin        


Download         Length: 86 a.a.        Molecular weight: 9439.71 Da        Isoelectric Point: 7.2431

>T229321 WP_023203422.1 NZ_CP089790:3617911-3618168 [Salmonella enterica subsp. enterica serovar Kentucky]
MNASGASVRHINSETCMTTSYSHIPSQHLKGDWQEEAGFKTGRGVTVKISQGCIVLMADSNEEQKLREQLYKAEQVVKGM
RDVIV

Download         Length: 258 bp

>T229321 NZ_CP124442:868128-868502 [Escherichia coli]
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTC
CCGACTGCTGGACCAGCACTATGGCCTCACACTGAATGACACACCGTTTGCCGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCAGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGA

Antitoxin


Download         Length: 333 bp

>AT229321 NZ_CP089790:c3618086-3617754 [Salmonella enterica subsp. enterica serovar Kentucky]
TCCGCCATCAGCACAATACACCCCTGTGAAATCTTCACGGTGACGCCGCGCCCGGTCTTAAATCCCGCTTCTTCCTGCCA
GTCACCCTTAAGGTGCTGGCTGGGGATATGTGAGTAACTGGTGGTCATGCAGGTTTCGCTGTTGATGTGGCGGACGCTGG
CGCCGGAGGCATTCATATTTGCTGACTAAATAAATTCTTAATTCTCCGCCGGATGCTGGCTGATTGTGGAGCTTAGGGTG
AGCGAGTATGGGCGCGACATCCTGGCACCGCGCCTCCCTCTCCCCGGCCAGTACCGGGCGGTGATGAGCAACCGGCTACC
GGGGCCGTATTTT

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A3V3U6I8


Antitoxin

Download structure file

References