Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1991555..1991679 Replicon chromosome
Accession NC_008800
Organism Yersinia enterocolitica subsp. enterocolitica 8081

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1991577..1991671 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1991555..1991679 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
YE_RS09005 (YE1793) 1987170..1988126 + 957 WP_011816174.1 prolyl aminopeptidase -
YE_RS09010 (YE1794) 1988176..1988409 - 234 WP_004389928.1 DNA polymerase III subunit theta -
YE_RS09015 (YE1795) 1988793..1989302 + 510 WP_005170444.1 non-heme ferritin -
YE_RS09020 (YE1796) 1989693..1990079 + 387 WP_005170441.1 CopC domain-containing protein YobA -
YE_RS09025 (YE1797) 1990081..1990965 + 885 WP_005170439.1 copper homeostasis membrane protein CopD -
YE_RS09030 (YE1798) 1991062..1991403 + 342 WP_005170437.1 YebY family protein -
- 1991555..1991679 - 125 - - Antitoxin
- 1991577..1991671 + 95 - - Toxin
YE_RS09035 (YE1799) 1991747..1992855 - 1109 Protein_1742 tyrosine-type recombinase/integrase -
YE_RS09045 (YE1800) 1992830..1993099 - 270 WP_011816177.1 excisionase -
YE_RS09050 (YE1801) 1993206..1993532 - 327 WP_050942006.1 hypothetical protein -
YE_RS09055 (YE1802) 1993532..1993870 - 339 WP_011816179.1 hypothetical protein -
YE_RS09060 (YE1803) 1993951..1994844 - 894 Protein_1746 IS3 family transposase -
YE_RS09065 (YE1804) 1994927..1995937 + 1011 Protein_1747 oxidoreductase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - ail 1984654..2022489 37835
flank IS/Tn - - 1985629..1986633 1004


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 95 bp

>T21933 NC_008800:1991577-1991671 [Yersinia enterocolitica subsp. enterocolitica 8081]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTCTTTTT

Antitoxin


Download         Length: 125 bp

>AT21933 NC_008800:c1991679-1991555 [Yersinia enterocolitica subsp. enterocolitica 8081]
AACAAATTAAAAAGAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References