Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1335581..1335699 Replicon chromosome
Accession NZ_LR590469
Organism Yersinia enterocolitica subsp. enterocolitica strain NCTC12982

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1335583..1335677 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1335581..1335699 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FGL26_RS06380 1332400..1332852 + 453 WP_005170432.1 phage tail protein -
FGL26_RS06385 1332849..1333991 + 1143 WP_005170434.1 phage late control D family protein -
FGL26_RS06390 1334084..1334302 + 219 WP_005170435.1 DNA-binding transcriptional regulator -
FGL26_RS06395 1334455..1335525 + 1071 WP_032912738.1 tyrosine-type recombinase/integrase -
- 1335581..1335699 + 119 - - Antitoxin
- 1335583..1335677 - 95 - - Toxin
FGL26_RS06400 1335851..1336192 - 342 WP_005170437.1 YebY family protein -
FGL26_RS06405 1336289..1337173 - 885 WP_005170439.1 copper homeostasis membrane protein CopD -
FGL26_RS06410 1337175..1337561 - 387 WP_005170441.1 CopC domain-containing protein YobA -
FGL26_RS06415 1337964..1338473 - 510 WP_005170444.1 non-heme ferritin -
FGL26_RS06420 1338857..1339090 + 234 WP_004389928.1 DNA polymerase III subunit theta -
FGL26_RS06425 1339140..1340096 - 957 WP_005170448.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - pilW / pilW 1286973..1339090 52117
flank IS/Tn - - 1340633..1341637 1004


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 95 bp

>T288473 NZ_LR590469:c1335677-1335583 [Yersinia enterocolitica subsp. enterocolitica]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT

Antitoxin


Download         Length: 119 bp

>AT288473 NZ_LR590469:1335581-1335699 [Yersinia enterocolitica subsp. enterocolitica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References