Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1274006..1274124 Replicon chromosome
Accession NZ_CP009367
Organism Yersinia enterocolitica strain WA

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1274028..1274122 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1274006..1274124 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CH47_RS06295 1269609..1270565 + 957 WP_005170448.1 prolyl aminopeptidase -
CH47_RS06300 1270615..1270848 - 234 WP_004389928.1 DNA polymerase III subunit theta -
CH47_RS06305 1271232..1271741 + 510 WP_005170444.1 non-heme ferritin -
CH47_RS06310 1272144..1272530 + 387 WP_005170441.1 CopC domain-containing protein YobA -
CH47_RS06315 1272532..1273416 + 885 WP_005170439.1 copper homeostasis membrane protein CopD -
CH47_RS06320 1273513..1273854 + 342 WP_005170437.1 YebY family protein -
- 1274006..1274124 - 119 - - Antitoxin
- 1274028..1274122 + 95 - - Toxin
CH47_RS06325 1274180..1275250 - 1071 WP_032912738.1 tyrosine-type recombinase/integrase -
CH47_RS21565 1275403..1275621 - 219 WP_005170435.1 DNA-binding transcriptional regulator -
CH47_RS06330 1275714..1276856 - 1143 WP_005170434.1 phage late control D family protein -
CH47_RS06335 1276853..1277305 - 453 WP_005170432.1 phage tail protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - pilW / pilW / ail 1267092..1327104 60012
flank IS/Tn - - 1268068..1269072 1004


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 95 bp

>T48830 NZ_CP009367:1274028-1274122 [Yersinia enterocolitica]
AACAAGCCTACGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGT
ATTCGGTCTTTTTTT

Antitoxin


Download         Length: 119 bp

>AT48830 NZ_CP009367:c1274124-1274006 [Yersinia enterocolitica]
ATAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAACGTAGGCTTGTTCAGCCATACTCTTTAAGAGTAG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References