Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 397885..398153 Replicon chromosome
Accession NZ_CP069624
Organism Escherichia coli strain PBP8

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 397923..398025 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 397885..398153 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JSQ93_RS01960 395042..396481 + 1440 WP_001704100.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
JSQ93_RS01965 396599..396835 + 237 WP_001295499.1 YebV family protein -
JSQ93_RS01970 396940..397131 + 192 WP_001317886.1 YebW family protein -
JSQ93_RS01975 397132..397788 - 657 WP_000812743.1 protein-serine/threonine phosphatase -
- 397885..398153 + 269 - - Antitoxin
- 397923..398025 - 103 - - Toxin
JSQ93_RS01980 398183..398524 - 342 WP_000984819.1 YebY family protein -
JSQ93_RS01985 398537..399409 - 873 WP_000879311.1 copper homeostasis membrane protein CopD -
JSQ93_RS01990 399413..399787 - 375 WP_000168747.1 CopC domain-containing protein YobA -
JSQ93_RS01995 399926..400156 + 231 WP_000916763.1 DNA polymerase III subunit theta -
JSQ93_RS02000 400259..400915 + 657 WP_000011644.1 carbon-nitrogen hydrolase family protein YobB -
JSQ93_RS02005 400939..401601 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - - 382045..470005 87960


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T191305 NZ_CP069624:c398025-397923 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT191305 NZ_CP069624:397885-398153 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References