MGE detailed information
MGE type: Prophage MGE length: 74971 bp
Accession: NZ_CP007799 Location: 2004207..2079177 Organism: Escherichia coli Nissle 1917 Replicon: chromosome
Accession: NZ_CP007799 Location: 2004207..2079177 Organism: Escherichia coli Nissle 1917 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECOLIN_RS10200 (ECOLIN_09835) | 1999616..2000117 | - | 502 | Protein_1943 | L-methionine (R)-S-oxide reductase | - |
| ECOLIN_RS10205 (ECOLIN_09840) | 2000248..2001531 | + | 1284 | WP_001304298.1 | membrane integrity lipid transport subunit YebS | - |
| ECOLIN_RS10210 (ECOLIN_09845) | 2001500..2004133 | + | 2634 | WP_001327806.1 | lipid-binding membrane homeostasis protein YebT | - |
| ECOLIN_RS10215 (ECOLIN_09850) | 2004213..2005652 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECOLIN_RS10220 (ECOLIN_09855) | 2005770..2006006 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECOLIN_RS10225 (ECOLIN_09860) | 2006111..2006302 | + | 192 | WP_001317886.1 | YebW family protein | - |
| ECOLIN_RS10230 (ECOLIN_09865) | 2006303..2006959 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 2007056..2007324 | + | 269 | - | - | Antitoxin Detail |
| - | 2007094..2007196 | - | 103 | - | - | Toxin Detail |
| ECOLIN_RS10240 (ECOLIN_09875) | 2007354..2007695 | - | 342 | WP_000984819.1 | YebY family protein | - |
| ECOLIN_RS10245 (ECOLIN_09880) | 2007708..2008580 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| ECOLIN_RS10250 (ECOLIN_09885) | 2008584..2008958 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECOLIN_RS10255 (ECOLIN_09890) | 2009097..2009327 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECOLIN_RS10260 (ECOLIN_09895) | 2009430..2010086 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| ECOLIN_RS10265 (ECOLIN_09900) | 2010110..2010772 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ECOLIN_RS10275 (ECOLIN_09905) | 2010769..2012829 | - | 2061 | Protein_1956 | oligopeptidase B | - |
| ECOLIN_RS10280 (ECOLIN_09910) | 2013038..2013697 | - | 660 | WP_000024725.1 | tellurite resistance TerB family protein | - |
| ECOLIN_RS10290 (ECOLIN_09920) | 2014024..2014380 | - | 357 | WP_001295500.1 | protein YebF | - |
| ECOLIN_RS10295 (ECOLIN_09925) | 2014447..2014737 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| ECOLIN_RS10300 (ECOLIN_09930) | 2014871..2016050 | + | 1180 | Protein_1960 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| ECOLIN_RS10305 (ECOLIN_09935) | 2016106..2016747 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| ECOLIN_RS10310 (ECOLIN_09940) | 2016784..2018595 | - | 1812 | WP_001069461.1 | phosphogluconate dehydratase | - |
| ECOLIN_RS10315 (ECOLIN_09945) | 2018830..2020305 | - | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| ECOLIN_RS10325 (ECOLIN_09955) | 2020643..2021512 | + | 870 | WP_001056695.1 | DNA-binding transcriptional regulator HexR | - |
| ECOLIN_RS10330 (ECOLIN_09960) | 2021640..2023082 | + | 1443 | WP_000091149.1 | pyruvate kinase | - |
| ECOLIN_RS10335 (ECOLIN_09965) | 2023214..2024185 | - | 972 | WP_001304294.1 | Lipid A biosynthesis myristoyltransferase | VF |
| ECOLIN_RS10340 (ECOLIN_09970) | 2024304..2025626 | - | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| ECOLIN_RS10345 (ECOLIN_09975) | 2025642..2026574 | - | 933 | WP_011076428.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| ECOLIN_RS10350 (ECOLIN_09980) | 2026653..2027408 | + | 756 | WP_000202996.1 | Zinc import ATP-binding protein ZnuC | VF |
| ECOLIN_RS10355 (ECOLIN_09985) | 2027405..2028190 | + | 786 | WP_000571478.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| ECOLIN_RS10360 (ECOLIN_09990) | 2028337..2029347 | - | 1011 | WP_000568522.1 | Holliday junction branch migration DNA helicase RuvB | - |
| ECOLIN_RS10365 (ECOLIN_09995) | 2029356..2029967 | - | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| ECOLIN_RS30690 | 2030106..2030171 | - | 66 | WP_072123646.1 | stress response small protein YobI | - |
| ECOLIN_RS10370 (ECOLIN_10000) | 2030243..2030845 | + | 603 | WP_001024947.1 | YebB family permuted papain-like enzyme | - |
| ECOLIN_RS10375 (ECOLIN_10005) | 2030847..2031368 | - | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| ECOLIN_RS10380 (ECOLIN_10010) | 2031403..2032143 | - | 741 | WP_000907234.1 | putative transcriptional regulatory protein YebC | VF |
| ECOLIN_RS10385 (ECOLIN_10015) | 2032172..2032624 | - | 453 | WP_077393227.1 | dihydroneopterin triphosphate diphosphatase | - |
| ECOLIN_RS10390 (ECOLIN_10020) | 2032617..2034389 | - | 1773 | WP_001258675.1 | aspartate--tRNA ligase | - |
| ECOLIN_RS10395 (ECOLIN_10025) | 2034699..2035265 | + | 567 | WP_000891621.1 | hydrolase | - |
| ECOLIN_RS10405 (ECOLIN_10030) | 2035867..2036256 | - | 390 | WP_024199385.1 | DNA polymerase V | - |
| ECOLIN_RS10410 (ECOLIN_10035) | 2036335..2036577 | + | 243 | WP_000497431.1 | DinI family protein | - |
| ECOLIN_RS32090 (ECOLIN_10040) | 2036610..2036993 | + | 384 | WP_189328173.1 | phage tail protein | - |
| ECOLIN_RS10420 (ECOLIN_10045) | 2036995..2037438 | + | 444 | WP_001704105.1 | tail fiber assembly protein | - |
| ECOLIN_RS10425 (ECOLIN_10050) | 2037410..2038003 | - | 594 | WP_001704106.1 | tail assembly chaperone | - |
| ECOLIN_RS32510 | 2038003..2038455 | - | 453 | WP_050557524.1 | hypothetical protein | - |
| ECOLIN_RS32330 | 2038447..2038935 | - | 489 | Protein_1986 | tail fiber protein | - |
| ECOLIN_RS28545 | 2039441..2039674 | + | 234 | WP_021567253.1 | hypothetical protein | - |
| ECOLIN_RS10435 (ECOLIN_10065) | 2039706..2043632 | - | 3927 | WP_001704108.1 | DUF1983 domain-containing protein | - |
| ECOLIN_RS10440 (ECOLIN_10070) | 2043675..2044292 | - | 618 | WP_001704109.1 | tail assembly protein | - |
| ECOLIN_RS10445 (ECOLIN_10075) | 2044285..2045004 | - | 720 | WP_001704110.1 | C40 family peptidase | - |
| ECOLIN_RS10450 (ECOLIN_10080) | 2045007..2045744 | - | 738 | WP_001704111.1 | phage minor tail protein L | - |
| ECOLIN_RS10455 (ECOLIN_10085) | 2045801..2046139 | - | 339 | WP_001704112.1 | phage tail protein | - |
| ECOLIN_RS10460 (ECOLIN_10090) | 2046136..2049273 | - | 3138 | WP_001704113.1 | phage tail tape measure protein | - |
| ECOLIN_RS10465 (ECOLIN_10095) | 2049257..2049571 | - | 315 | WP_071605477.1 | phage tail assembly protein T | - |
| ECOLIN_RS10470 (ECOLIN_10100) | 2049580..2050011 | - | 432 | WP_001704115.1 | phage minor tail protein G | - |
| ECOLIN_RS10475 (ECOLIN_10105) | 2050022..2050765 | - | 744 | WP_001704116.1 | phage tail protein | - |
| ECOLIN_RS10480 (ECOLIN_10110) | 2050775..2051176 | - | 402 | WP_001704117.1 | phage minor tail U family protein | - |
| ECOLIN_RS10485 (ECOLIN_10115) | 2051173..2051751 | - | 579 | WP_001704118.1 | phage tail protein | - |
| ECOLIN_RS10490 (ECOLIN_10120) | 2051761..2052036 | - | 276 | WP_032315004.1 | DNA breaking-rejoining protein | - |
| ECOLIN_RS10495 (ECOLIN_10125) | 2052029..2052355 | - | 327 | WP_001704120.1 | DUF2190 family protein | - |
| ECOLIN_RS10500 (ECOLIN_10130) | 2052438..2054453 | - | 2016 | WP_158414457.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| ECOLIN_RS10505 (ECOLIN_10135) | 2054398..2055897 | - | 1500 | WP_001704122.1 | phage portal protein | - |
| ECOLIN_RS10510 (ECOLIN_10140) | 2055894..2056109 | - | 216 | WP_001704123.1 | hypothetical protein | - |
| ECOLIN_RS10515 (ECOLIN_10145) | 2056106..2058208 | - | 2103 | WP_001704124.1 | phage terminase large subunit family protein | - |
| ECOLIN_RS10520 (ECOLIN_10150) | 2058208..2058696 | - | 489 | WP_001704125.1 | DUF1441 family protein | - |
| ECOLIN_RS10525 (ECOLIN_10160) | 2058880..2059608 | - | 729 | WP_000066210.1 | hypothetical protein | - |
| ECOLIN_RS10530 (ECOLIN_10165) | 2059783..2060013 | - | 231 | WP_001446080.1 | hypothetical protein | - |
| ECOLIN_RS10535 (ECOLIN_10170) | 2060012..2060608 | + | 597 | WP_001446081.1 | hypothetical protein | - |
| ECOLIN_RS10540 (ECOLIN_10175) | 2060677..2060874 | - | 198 | WP_001704127.1 | hypothetical protein | - |
| ECOLIN_RS10545 (ECOLIN_10180) | 2061088..2061654 | - | 567 | WP_077249777.1 | DUF2514 domain-containing protein | - |
| ECOLIN_RS10550 (ECOLIN_10185) | 2061588..2062130 | - | 543 | WP_032315006.1 | lysozyme | - |
| ECOLIN_RS10555 (ECOLIN_10190) | 2062108..2062386 | - | 279 | WP_024199389.1 | holin | - |
| ECOLIN_RS10560 (ECOLIN_10195) | 2062532..2063584 | - | 1053 | WP_001704131.1 | site-specific DNA-methyltransferase | - |
| ECOLIN_RS10565 (ECOLIN_10200) | 2063735..2063926 | - | 192 | WP_024199390.1 | hypothetical protein | - |
| ECOLIN_RS10570 (ECOLIN_10205) | 2064095..2064994 | - | 900 | WP_001704133.1 | DUF114 domain-containing protein | - |
| ECOLIN_RS10575 (ECOLIN_10210) | 2065007..2065213 | - | 207 | WP_001704134.1 | hypothetical protein | - |
| ECOLIN_RS10580 (ECOLIN_10220) | 2065646..2066335 | - | 690 | WP_001704136.1 | hypothetical protein | - |
| ECOLIN_RS10585 (ECOLIN_10225) | 2066357..2067352 | - | 996 | WP_024199391.1 | DUF968 domain-containing protein | - |
| ECOLIN_RS10590 (ECOLIN_10230) | 2067349..2068032 | - | 684 | WP_001704138.1 | phage regulatory protein/antirepressor Ant | - |
| ECOLIN_RS10595 (ECOLIN_10235) | 2068046..2068432 | - | 387 | WP_001704139.1 | RusA family crossover junction endodeoxyribonuclease | - |
| ECOLIN_RS10600 (ECOLIN_10240) | 2068429..2069745 | - | 1317 | WP_032315008.1 | phage N-6-adenine-methyltransferase | - |
| ECOLIN_RS10605 (ECOLIN_10245) | 2069745..2070626 | - | 882 | WP_001704141.1 | conserved phage C-terminal domain-containing protein | - |
| ECOLIN_RS28550 | 2070616..2070795 | - | 180 | WP_071840634.1 | DUF4222 domain-containing protein | - |
| ECOLIN_RS10615 (ECOLIN_10255) | 2070971..2071534 | - | 564 | WP_001704142.1 | hypothetical protein | - |
| ECOLIN_RS28555 (ECOLIN_10260) | 2071566..2071823 | - | 258 | WP_024195799.1 | helix-turn-helix domain-containing protein | - |
| ECOLIN_RS10625 (ECOLIN_10265) | 2071893..2072612 | + | 720 | WP_032140310.1 | helix-turn-helix transcriptional regulator | - |
| ECOLIN_RS28560 | 2072857..2073222 | + | 366 | WP_016240143.1 | hypothetical protein | - |
| ECOLIN_RS10635 (ECOLIN_10275) | 2073565..2074482 | + | 918 | WP_001704144.1 | recombination-associated protein RdgC | - |
| ECOLIN_RS10640 (ECOLIN_10280) | 2074591..2075130 | + | 540 | WP_000120456.1 | hypothetical protein | - |
| ECOLIN_RS32335 | 2075118..2075294 | + | 177 | WP_001253785.1 | hypothetical protein | - |
| ECOLIN_RS10645 (ECOLIN_10290) | 2075291..2075545 | + | 255 | WP_000215602.1 | hypothetical protein | - |
| ECOLIN_RS10650 (ECOLIN_10295) | 2075542..2075889 | + | 348 | WP_000126106.1 | hypothetical protein | - |
| ECOLIN_RS10655 (ECOLIN_10300) | 2075891..2076199 | + | 309 | WP_000359354.1 | hypothetical protein | - |
| ECOLIN_RS10660 (ECOLIN_10305) | 2076213..2076680 | + | 468 | WP_000210514.1 | DUF550 domain-containing protein | - |
| ECOLIN_RS10665 (ECOLIN_10310) | 2076683..2076937 | + | 255 | WP_000492059.1 | DUF4222 domain-containing protein | - |
| ECOLIN_RS10670 (ECOLIN_10315) | 2076959..2077528 | + | 570 | WP_001704145.1 | 3'-5' exoribonuclease | - |
| ECOLIN_RS10675 (ECOLIN_10320) | 2077569..2077805 | + | 237 | WP_003839185.1 | excisionase family protein | - |
| ECOLIN_RS10680 (ECOLIN_10325) | 2077864..2079177 | + | 1314 | WP_001704146.1 | Putative defective protein IntQ ; Integrase | Integrase |
| ECOLIN_RS10685 (ECOLIN_10330) | 2079156..2079929 | + | 774 | WP_050557523.1 | DUF72 domain-containing protein | - |
| ECOLIN_RS10690 (ECOLIN_10335) | 2079982..2080377 | + | 396 | WP_000252980.1 | MAPEG family protein | - |
| ECOLIN_RS10695 (ECOLIN_10340) | 2080418..2081161 | + | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| ECOLIN_RS10700 (ECOLIN_10345) | 2081158..2082129 | + | 972 | WP_000564738.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli strain PBP8 | Prophage | TA191305 | NZ_CP069624 | 382045..470005 | 0.004 |