Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | I | Classification (family/domain) | symE-ohsC/SymE(toxin) |
Location | 4569315..4569727 | Replicon | chromosome |
Accession | NZ_CP062245 | ||
Organism | Escherichia coli strain AML003_ev01 |
Toxin (Protein)
Gene name | symE | Uniprot ID | U9YSY7 |
Locus tag | IHN50_RS22015 | Protein ID | WP_000132601.1 |
Coordinates | 4569315..4569656 (-) | Length | 114 a.a. |
Antitoxin (RNA)
Gene name | ohsC | ||
Locus tag | - | ||
Coordinates | 4569651..4569727 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
IHN50_RS22005 | 4566728..4567774 | - | 1047 | WP_000437621.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
IHN50_RS22010 | 4567774..4569153 | - | 1380 | WP_000443951.1 | 5-methylcytosine-specific restriction endonuclease subunit McrB | - |
IHN50_RS22015 | 4569315..4569656 | - | 342 | WP_000132601.1 | endoribonuclease SymE | Toxin |
- | 4569651..4569727 | + | 77 | NuclAT_14 | - | Antitoxin |
- | 4569651..4569727 | + | 77 | NuclAT_14 | - | Antitoxin |
- | 4569651..4569727 | + | 77 | NuclAT_14 | - | Antitoxin |
- | 4569651..4569727 | + | 77 | NuclAT_14 | - | Antitoxin |
- | 4569651..4569727 | + | 77 | NuclAT_15 | - | Antitoxin |
- | 4569651..4569727 | + | 77 | NuclAT_15 | - | Antitoxin |
- | 4569651..4569727 | + | 77 | NuclAT_15 | - | Antitoxin |
- | 4569651..4569727 | + | 77 | NuclAT_15 | - | Antitoxin |
IHN50_RS22020 | 4569884..4571278 | - | 1395 | WP_001272447.1 | type I restriction-modification system specificity subunit | - |
IHN50_RS22025 | 4571275..4572864 | - | 1590 | WP_001063204.1 | type I restriction-modification system methyltransferase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
inside | Genomic island | - | - | 4562230..4571278 | 9048 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 114 a.a. Molecular weight: 12203.02 Da Isoelectric Point: 8.5012
>T173927 WP_000132601.1 NZ_CP062245:c4569656-4569315 [Escherichia coli]
MTDTHSIAQPFEAEVSPANNRHVTVGYASRYPDYSRIPAITLKGQWLEAAGFATGTAVDVKVMEGCIVLTAQPPAAEESE
LMQSLRQVCKLSARKQKQVQAFIGVIAGKQKVA
MTDTHSIAQPFEAEVSPANNRHVTVGYASRYPDYSRIPAITLKGQWLEAAGFATGTAVDVKVMEGCIVLTAQPPAAEESE
LMQSLRQVCKLSARKQKQVQAFIGVIAGKQKVA
Download Length: 342 bp
>T173927 NZ_CP080400:c2329778-2329698 [Dickeya fangzhongdai]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 77 bp
>AT173927 NZ_CP062245:4569651-4569727 [Escherichia coli]
AGTCATAACTGCTATTCTCCAGGAATAGTGATTGTGATTAGCGATGCGGGTGTGTTGGCGCACATCCGCACCGCGCT
AGTCATAACTGCTATTCTCCAGGAATAGTGATTGTGATTAGCGATGCGGGTGTGTTGGCGCACATCCGCACCGCGCT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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