Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) symE-ohsC/SymE(toxin)
Location 4570515..4570927 Replicon chromosome
Accession NZ_CP062241
Organism Escherichia coli strain AML001_ev01

Toxin (Protein)


Gene name symE Uniprot ID U9YSY7
Locus tag IHN54_RS22020 Protein ID WP_000132601.1
Coordinates 4570515..4570856 (-) Length 114 a.a.

Antitoxin (RNA)


Gene name ohsC
Locus tag -
Coordinates 4570851..4570927 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IHN54_RS22010 4567928..4568974 - 1047 WP_000437621.1 5-methylcytosine-specific restriction endonuclease system specificity protein McrC -
IHN54_RS22015 4568974..4570353 - 1380 WP_000443951.1 5-methylcytosine-specific restriction endonuclease subunit McrB -
IHN54_RS22020 4570515..4570856 - 342 WP_000132601.1 endoribonuclease SymE Toxin
- 4570851..4570927 + 77 NuclAT_14 - Antitoxin
- 4570851..4570927 + 77 NuclAT_14 - Antitoxin
- 4570851..4570927 + 77 NuclAT_14 - Antitoxin
- 4570851..4570927 + 77 NuclAT_14 - Antitoxin
- 4570851..4570927 + 77 NuclAT_15 - Antitoxin
- 4570851..4570927 + 77 NuclAT_15 - Antitoxin
- 4570851..4570927 + 77 NuclAT_15 - Antitoxin
- 4570851..4570927 + 77 NuclAT_15 - Antitoxin
IHN54_RS22025 4571084..4572478 - 1395 WP_001272447.1 type I restriction-modification system specificity subunit -
IHN54_RS22030 4572475..4574064 - 1590 WP_001063204.1 type I restriction-modification system methyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - - 4563430..4572478 9048


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin SymE-like

(20-71)


Sequences

Toxin        


Download         Length: 114 a.a.        Molecular weight: 12203.02 Da        Isoelectric Point: 8.5012

>T173755 WP_000132601.1 NZ_CP062241:c4570856-4570515 [Escherichia coli]
MTDTHSIAQPFEAEVSPANNRHVTVGYASRYPDYSRIPAITLKGQWLEAAGFATGTAVDVKVMEGCIVLTAQPPAAEESE
LMQSLRQVCKLSARKQKQVQAFIGVIAGKQKVA

Download         Length: 342 bp

>T173755 NZ_CP080294:1832330-1832593 [Cupriavidus cauae]
ATGCGAACAATCCACTTCTCCGATGCCCGCAACAATCTGAAGGCGGTCATCGATCAAGCCATTGCCGATCACGACGCGAT
CCTCATCACGCGACGCGACGCACCCAACGCAGTGATCATGTCGCAAGAGCAATACGACAGCTGGATGGAAACCATGTACC
TGCTGAGCAATCCGGCCAACGCAAAGCGGCTGATGCAGTCAATTGATCAGCACCGGAGCGGCAAAGGCGTGAAGCATGAT
CTGATCGATCCGGATGCTGAATGA

Antitoxin


Download         Length: 77 bp

>AT173755 NZ_CP062241:4570851-4570927 [Escherichia coli]
AGTCATAACTGCTATTCTCCAGGAATAGTGATTGTGATTAGCGATGCGGGTGTGTTGGCGCACATCCGCACCGCGCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB U9YSY7

Antitoxin

Download structure file

References