170803

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) symE-ohsC/SymE(toxin)
Location 4624281..4624693 Replicon chromosome
Accession NZ_CP060708
Organism Escherichia coli strain MFDpir

Toxin (Protein)


Gene name symE Uniprot ID U9YSY7
Locus tag H9446_RS22355 Protein ID WP_000132601.1
Coordinates 4624281..4624622 (-) Length 114 a.a.

Antitoxin (RNA)


Gene name ohsC
Locus tag -
Coordinates 4624617..4624693 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H9446_RS22345 4621694..4622740 - 1047 WP_000437621.1 5-methylcytosine-specific restriction endonuclease system specificity protein McrC -
H9446_RS22350 4622740..4624119 - 1380 WP_000443951.1 5-methylcytosine-specific restriction endonuclease subunit McrB -
H9446_RS22355 4624281..4624622 - 342 WP_000132601.1 endoribonuclease SymE Toxin
- 4624617..4624693 + 77 NuclAT_14 - Antitoxin
- 4624617..4624693 + 77 NuclAT_14 - Antitoxin
- 4624617..4624693 + 77 NuclAT_14 - Antitoxin
- 4624617..4624693 + 77 NuclAT_14 - Antitoxin
- 4624617..4624693 + 77 NuclAT_15 - Antitoxin
- 4624617..4624693 + 77 NuclAT_15 - Antitoxin
- 4624617..4624693 + 77 NuclAT_15 - Antitoxin
- 4624617..4624693 + 77 NuclAT_15 - Antitoxin
H9446_RS22360 4624850..4626244 - 1395 WP_001272447.1 type I restriction-modification system specificity subunit -
H9446_RS22365 4626241..4627830 - 1590 WP_001063204.1 type I restriction-modification system methyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - - 4617196..4626244 9048


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin SymE-like

(20-71)


Sequences

Toxin        


Download         Length: 114 a.a.        Molecular weight: 12203.02 Da        Isoelectric Point: 8.5012

>T170803 WP_000132601.1 NZ_CP060708:c4624622-4624281 [Escherichia coli]
MTDTHSIAQPFEAEVSPANNRHVTVGYASRYPDYSRIPAITLKGQWLEAAGFATGTAVDVKVMEGCIVLTAQPPAAEESE
LMQSLRQVCKLSARKQKQVQAFIGVIAGKQKVA

Download         Length: 342 bp

>T170803 NZ_CP077707:c118121-117705 [Salmonella enterica subsp. enterica]
GTGAACAAAACGTATATGCTGGATACCAATATCTGCTCATTCATCATGCGTGAGCAGCCGAAGGCCGTGATCAGACGCTT
AGAGCAAGCGGTGCTGCGCAACCATCGCATCGTGGTCTCCGCTATTACCTACGCCGAAATGCGCTTCGGTGCTATCGGGA
AAAAGGCCTCGCCCCGTCATGGCCAACTGGTCGATGCGTTCTGCGCCCGCCTCGATGCGATTCTGCCGTGGGACCGTGCC
GCAGTCGATGCCACTGTAGAGGTCAAAGCAGCACTAACCGCAGCCGGTACACCCATCGGTCCCAACGACACAGCGATTGC
CGGACATGCTATAGCTGCAGGGGCCATTCTGGTGACCAATAATACGCGAGAGTTTGAGCGGGTGCCAAATTTGGTATTAG
AAGACTGGGTTAAATAA

Antitoxin


Download         Length: 77 bp

>AT170803 NZ_CP060708:4624617-4624693 [Escherichia coli]
AGTCATAACTGCTATTCTCCAGGAATAGTGATTGTGATTAGCGATGCGGGTGTGTTGGCGCACATCCGCACCGCGCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB U9YSY7

Antitoxin

Download structure file

References