Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 3456658..3457276 Replicon chromosome
Accession NZ_CP046025
Organism Escherichia coli strain C439

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag GJH08_RS16820 Protein ID WP_001291435.1
Coordinates 3457058..3457276 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag GJH08_RS16815 Protein ID WP_000344800.1
Coordinates 3456658..3457032 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GJH08_RS16805 3451764..3454913 + 3150 WP_001132469.1 multidrug efflux RND transporter permease subunit -
GJH08_RS16810 3455406..3456422 + 1017 WP_010723085.1 IS5-like element IS5 family transposase -
GJH08_RS16815 3456658..3457032 + 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
GJH08_RS16820 3457058..3457276 + 219 WP_001291435.1 hemolysin expression modulator Hha Toxin
GJH08_RS16825 3457448..3457999 + 552 WP_000102564.1 maltose O-acetyltransferase -
GJH08_RS16830 3458115..3458585 + 471 WP_000136192.1 YlaC family protein -
GJH08_RS16835 3458749..3460299 + 1551 WP_001310610.1 cyclic-guanylate-specific phosphodiesterase PdeB -
GJH08_RS16840 3460341..3460694 - 354 WP_000878140.1 DUF1428 domain-containing protein -
GJH08_RS16850 3461073..3461384 + 312 WP_000409911.1 MGMT family protein -
GJH08_RS16855 3461415..3461987 - 573 WP_000779842.1 YbaY family lipoprotein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
flank IS/Tn - - 3455442..3456422 980


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T143417 WP_001291435.1 NZ_CP046025:3457058-3457276 [Escherichia coli]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

>T143417 NZ_CP061082:c1108328-1108125 [Serratia liquefaciens]
ATGACTAAAACTGATTATCTGATGCGTTTACGTAAATGCACCACTATTGACACCCTTGAACGCGTTATTGAAAAAAATAA
GTATGAGCTTTCGGATGACGAATTGGAGCTGTTTTACTCTGCAGCTGACCACCGTCTGGCTGAGCTCACCATGAATAAGC
TCTACGATAAAATCCCAACGGCCGTTTGGAAGTTCGTACGTTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT143417 WP_000344800.1 NZ_CP046025:3456658-3457032 [Escherichia coli]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp

>AT143417 NZ_CP061082:c1108752-1108384 [Serratia liquefaciens]
ATGGATGAGTATTCGCCTAAAAGGCACGATATTGCTCAGCTGAAATTCTTGTGCGAAAATTTGTATGATGAAGGCATAGC
CACGCTGGGCGACAGCCACCACGGCTGGGTGAACGACCCAACGTCTTCCGTCAACCTCCAGCTTAATGAGTTGATTGAAC
ATATTGCTTCGTTTGTGATGAGTTATAAAATTAAATACATGGACGAAAGTGATTTATCGGAGTTAGTCGAGGAATATCTC
GATGATACCTACACGCTGTTCAGCAGTTACGGTATCAATGATTCCGATCTGCGTCGCTGGCAAAAAACCAAGGCGCGATT
ATTCAGAATGTTCTCAGGAGAGGGCATCTGTACGACAATGAAATCTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References