Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) symE-ohsC/SymE(toxin)
Location 396338..396750 Replicon chromosome
Accession NZ_CP043213
Organism Escherichia coli O16:H48 strain CV601gfp

Toxin (Protein)


Gene name symE Uniprot ID U9YSY7
Locus tag FYA04_RS01855 Protein ID WP_000132601.1
Coordinates 396338..396679 (-) Length 114 a.a.

Antitoxin (RNA)


Gene name ohsC
Locus tag -
Coordinates 396674..396750 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FYA04_RS01845 393751..394797 - 1047 WP_000437621.1 5-methylcytosine-specific restriction endonuclease system specificity protein McrC -
FYA04_RS01850 394797..396176 - 1380 WP_000443951.1 5-methylcytosine-specific restriction endonuclease subunit McrB -
FYA04_RS01855 396338..396679 - 342 WP_000132601.1 endoribonuclease SymE Toxin
- 396674..396750 + 77 NuclAT_14 - Antitoxin
- 396674..396750 + 77 NuclAT_14 - Antitoxin
- 396674..396750 + 77 NuclAT_14 - Antitoxin
- 396674..396750 + 77 NuclAT_14 - Antitoxin
- 396674..396750 + 77 NuclAT_15 - Antitoxin
- 396674..396750 + 77 NuclAT_15 - Antitoxin
- 396674..396750 + 77 NuclAT_15 - Antitoxin
- 396674..396750 + 77 NuclAT_15 - Antitoxin
FYA04_RS01860 396907..398301 - 1395 WP_001272447.1 type I restriction-modification system specificity subunit -
FYA04_RS01865 398298..399887 - 1590 WP_001063204.1 type I restriction-modification system methyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - - 389253..398301 9048


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin SymE-like

(20-71)


Sequences

Toxin        


Download         Length: 114 a.a.        Molecular weight: 12203.02 Da        Isoelectric Point: 8.5012

>T137893 WP_000132601.1 NZ_CP043213:c396679-396338 [Escherichia coli O16:H48]
MTDTHSIAQPFEAEVSPANNRHVTVGYASRYPDYSRIPAITLKGQWLEAAGFATGTAVDVKVMEGCIVLTAQPPAAEESE
LMQSLRQVCKLSARKQKQVQAFIGVIAGKQKVA

Download         Length: 342 bp

>T137893 NZ_CP057104:911080-911232 [Escherichia fergusonii]
ATGCTGACAAAATATGCCCTTGTGGCAATCATCGTACTGTGTTGTACAGTACTGGGATTCACGCTGATGGTAGGCGACTC
GTTGTGTGAGTTGAGTATCAGAGAACGTGGTATGGAGTTTAAGGCAGTTCTCGCTTACGAATCGAAGAAGTAG

Antitoxin


Download         Length: 77 bp

>AT137893 NZ_CP043213:396674-396750 [Escherichia coli O16:H48]
AGTCATAACTGCTATTCTCCAGGAATAGTGATTGTGATTAGCGATGCGGGTGTGTTGGCGCACATCCGCACCGCGCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB U9YSY7

Antitoxin

Download structure file

References