Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 3743384..3744002 Replicon chromosome
Accession NZ_CP043195
Organism Escherichia coli O16:H48 strain PG20180062

Toxin (Protein)


Gene name Hha Uniprot ID H5UYE2
Locus tag FYA13_RS18305 Protein ID WP_001291435.1
Coordinates 3743784..3744002 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID S1PTH5
Locus tag FYA13_RS18300 Protein ID WP_000344800.1
Coordinates 3743384..3743758 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FYA13_RS18290 3738490..3741639 + 3150 WP_001132469.1 multidrug efflux RND transporter permease subunit -
FYA13_RS18295 3742168..3743148 + 981 WP_000019403.1 IS5-like element IS5 family transposase -
FYA13_RS18300 3743384..3743758 + 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
FYA13_RS18305 3743784..3744002 + 219 WP_001291435.1 hemolysin expression modulator Hha Toxin
FYA13_RS18310 3744174..3744725 + 552 WP_000102564.1 maltose O-acetyltransferase -
FYA13_RS18315 3744841..3745311 + 471 WP_000136192.1 YlaC family protein -
FYA13_RS18320 3745475..3747025 + 1551 WP_001310610.1 cyclic-guanylate-specific phosphodiesterase PdeB -
FYA13_RS18325 3747067..3747420 - 354 WP_000878140.1 DUF1428 domain-containing protein -
FYA13_RS18335 3747799..3748110 + 312 WP_000409911.1 MGMT family protein -
FYA13_RS18340 3748141..3748713 - 573 WP_000779842.1 YbaY family lipoprotein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
flank IS/Tn - - 3742168..3743148 980


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T137605 WP_001291435.1 NZ_CP043195:3743784-3744002 [Escherichia coli O16:H48]
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFIR

Download         Length: 219 bp

>T137605 NZ_CP043195:3743784-3744002 [Escherichia coli O16:H48]
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGTGT
TATCGAGAAAAATAAATACGAATTATCAGATAATGAACTGGCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAAT
TGACCATGAATAAACTGTACGACAAGATCCCTTCCTCAGTATGGAAATTTATTCGCTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>AT137605 WP_000344800.1 NZ_CP043195:3743384-3743758 [Escherichia coli O16:H48]
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPASLSC

Download         Length: 375 bp

>AT137605 NZ_CP043195:3743384-3743758 [Escherichia coli O16:H48]
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACCCTGTATCATGACTGCCTTGC
AAACCTTGAAGAAAGCAATCATGGCTGGGTAAACGACCCAACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGC
ATATTGCGACCTTCGCACTTAATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGTAGTTATGGTATTAATATGCAGGATCTTCAGAAATGGCGGAAGTCAGGTAATCGACT
ATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCGAGTTTATCTTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 2MW2
PDB 1JW2

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9QBQ5

References