Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) symER/SymE(toxin)
Location 4712970..4713382 Replicon chromosome
Accession NZ_CP040643
Organism Escherichia coli strain BE104

Toxin (Protein)


Gene name symE Uniprot ID U9YSY7
Locus tag FGC38_RS23035 Protein ID WP_000132601.1
Coordinates 4712970..4713311 (-) Length 114 a.a.

Antitoxin (RNA)


Gene name symR
Locus tag -
Coordinates 4713306..4713382 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FGC38_RS23025 4710383..4711429 - 1047 WP_000437621.1 5-methylcytosine-specific restriction endonuclease system specificity protein McrC -
FGC38_RS23030 4711429..4712808 - 1380 WP_000443951.1 5-methylcytosine-specific restriction endonuclease subunit McrB -
FGC38_RS23035 4712970..4713311 - 342 WP_000132601.1 endoribonuclease SymE Toxin
- 4713306..4713382 + 77 NuclAT_15 - Antitoxin
- 4713306..4713382 + 77 NuclAT_15 - Antitoxin
- 4713306..4713382 + 77 NuclAT_15 - Antitoxin
- 4713306..4713382 + 77 NuclAT_15 - Antitoxin
- 4713306..4713382 + 77 NuclAT_16 - Antitoxin
- 4713306..4713382 + 77 NuclAT_16 - Antitoxin
- 4713306..4713382 + 77 NuclAT_16 - Antitoxin
- 4713306..4713382 + 77 NuclAT_16 - Antitoxin
FGC38_RS23040 4713539..4714933 - 1395 WP_001272447.1 type I restriction-modification system specificity subunit -
FGC38_RS23045 4714930..4716519 - 1590 WP_001063204.1 type I restriction-modification system methyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - - 4705885..4714933 9048


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin SymE-like

(20-71)


Sequences

Toxin        


Download         Length: 114 a.a.        Molecular weight: 12203.02 Da        Isoelectric Point: 8.5012

>T126288 WP_000132601.1 NZ_CP040643:c4713311-4712970 [Escherichia coli]
MTDTHSIAQPFEAEVSPANNRHVTVGYASRYPDYSRIPAITLKGQWLEAAGFATGTAVDVKVMEGCIVLTAQPPAAEESE
LMQSLRQVCKLSARKQKQVQAFIGVIAGKQKVA

Download         Length: 342 bp

>T126288 NZ_CP040643:c4713311-4712970 [Escherichia coli]
ATGACTGACACGCATTCTATTGCACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCATGTCACCGTCGGTTA
TGCGAGTCGCTACCCGGATTACAGCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGAAGCCGCCGGTTTTGCCA
CTGGCACGGCGGTAGATGTCAAAGTGATGGAAGGCTGTATTGTCCTCACCGCCCAACCACCCGCCGCCGAGGAGAGCGAA
CTGATGCAGTCGCTACGCCAGGTGTGCAAACTGTCGGCGCGTAAACAAAAGCAGGTGCAGGCGTTTATTGGAGTGATTGC
CGGTAAACAGAAAGTCGCGTAA

Antitoxin


Download         Length: 77 bp

>AT126288 NZ_CP040643:4713306-4713382 [Escherichia coli]
AGTCATAACTGCTATTCTCCAGGAATAGTGATTGTGATTAGCGATGCGGGTGTGTTGGCGCACATCCGCACCGCGCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB U9YSY7

Antitoxin

Download structure file

References