TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Orphan Toxin (Protein)
| Predicted family | mazF (T137) | Predicted domain | cd06171 (Sigma70_r4) |
| Locus tag | orf3540 | Length | 238 a.a. |
| Coordinates | 3756204..3756920 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf3529 | 3751442..3752581 | - | 1140 | ORF3529 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3530 | 3752827..3753201 | - | 375 | ORF3530 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3531 | 3753276..3754331 | - | 1056 | ORF3531 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3532 | 3754402..3755325 | - | 924 | ORF3532 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3533 | 3755328..3756191 | - | 864 | ORF3533 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3534 | 3756204..3756920 | - | 717 | ORF3534 | Predicted ORF by PRODIGAL Version 1.20 | Toxin |
| orf3535 | 3756940..3757407 | - | 468 | ORF3535 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3536 | 3757415..3758476 | - | 1062 | ORF3536 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3537 | 3758473..3758784 | - | 312 | ORF3537 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3538 | 3758789..3759181 | - | 393 | ORF3538 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3539 | 3759204..3760520 | - | 1317 | ORF3539 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3540 | 3760727..3761641 | - | 915 | ORF3540 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Toxin
No domain identified.
Sequences
Orphan Toxin
Download Length: Molecular weight: 27532.51 Da Isoelectric Point: 4.8307
>ORF3534 Orphan_TA_86 Toxin
MLQDVFESEEFAAAPVLTPQQESHYLQAYLPLVRKVVRQLAPQCNCIIDRQDMEQTALMG
LLNAIRRYGLPDEGFAGYAVHRIRGAILDELRALDWRPRQLRQKYHQMKDLIRETRKKLG
HEPEWSELAVEGISHEDYLEYQQLEGAETLASLDELLNGEGPGIPLVGRELEDQFVTQQM
LQQALSQLSEKEQLILSMYYQHEMNLKEIALVLGLTEARICQLNKQIAQKIRDFVYPN
MLQDVFESEEFAAAPVLTPQQESHYLQAYLPLVRKVVRQLAPQCNCIIDRQDMEQTALMG
LLNAIRRYGLPDEGFAGYAVHRIRGAILDELRALDWRPRQLRQKYHQMKDLIRETRKKLG
HEPEWSELAVEGISHEDYLEYQQLEGAETLASLDELLNGEGPGIPLVGRELEDQFVTQQM
LQQALSQLSEKEQLILSMYYQHEMNLKEIALVLGLTEARICQLNKQIAQKIRDFVYPN
Download Length: 717 bp
>ORF3534 Orphan_TA_86 Toxin
TTAATTCGGATAGACAAAATCACGAATTTTCTGCGCGATCTGTTTATTCAGTTGACAAAT
TCGGGCCTCGGTTAGCCCTAATACCAGCGCAATCTCTTTGAGATTCATCTCATGCTGGTA
ATACATGGAGAGGATCAGTTGCTCTTTTTCGCTTAATTGTGAAAGCGCCTGTTGCAGCAT
TTGCTGAGTGACAAACTGATCTTCCAGCTCCCGGCCAACAAGCGGAATGCCTGGCCCTTC
GCCGTTCAGCAGTTCGTCCAGGCTGGCGAGCGTTTCCGCCCCTTCCAGTTGCTGATATTC
GAGATAATCTTCATGTGAGATCCCTTCCACGGCCAGTTCTGACCACTCCGGTTCGTGCCC
CAGTTTTTTGCGCGTTTCGCGAATCAGATCTTTCATCTGATGATATTTCTGTCGCAGCTG
GCGCGGTCGCCAGTCGAGAGCGCGCAGCTCATCCAGGATCGCGCCGCGAATACGATGCAC
GGCATAGCCCGCAAAACCTTCGTCCGGCAGCCCGTAGCGGCGGATGGCATTAAGCAGCCC
CATTAACGCCGTTTGTTCCATATCCTGACGATCAATAATGCAATTACACTGCGGGGCAAG
TTGCCGCACCACTTTACGCACCAACGGTAAATAGGCCTGCAAGTAGTGGCTCTCCTGCTG
CGGGGTTAATACCGGCGCGGCAGCAAATTCTTCCGACTCGAATACATCCTGTAGCAT
TTAATTCGGATAGACAAAATCACGAATTTTCTGCGCGATCTGTTTATTCAGTTGACAAAT
TCGGGCCTCGGTTAGCCCTAATACCAGCGCAATCTCTTTGAGATTCATCTCATGCTGGTA
ATACATGGAGAGGATCAGTTGCTCTTTTTCGCTTAATTGTGAAAGCGCCTGTTGCAGCAT
TTGCTGAGTGACAAACTGATCTTCCAGCTCCCGGCCAACAAGCGGAATGCCTGGCCCTTC
GCCGTTCAGCAGTTCGTCCAGGCTGGCGAGCGTTTCCGCCCCTTCCAGTTGCTGATATTC
GAGATAATCTTCATGTGAGATCCCTTCCACGGCCAGTTCTGACCACTCCGGTTCGTGCCC
CAGTTTTTTGCGCGTTTCGCGAATCAGATCTTTCATCTGATGATATTTCTGTCGCAGCTG
GCGCGGTCGCCAGTCGAGAGCGCGCAGCTCATCCAGGATCGCGCCGCGAATACGATGCAC
GGCATAGCCCGCAAAACCTTCGTCCGGCAGCCCGTAGCGGCGGATGGCATTAAGCAGCCC
CATTAACGCCGTTTGTTCCATATCCTGACGATCAATAATGCAATTACACTGCGGGGCAAG
TTGCCGCACCACTTTACGCACCAACGGTAAATAGGCCTGCAAGTAGTGGCTCTCCTGCTG
CGGGGTTAATACCGGCGCGGCAGCAAATTCTTCCGACTCGAATACATCCTGTAGCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| T137 | Deinococcus radiodurans R1 |
41.026 |
33.333 |
0.067 |