TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Orphan Toxin (Protein)
| Predicted family | doc (T10093) | Predicted domain | - |
| Locus tag | orf3456 | Length | 257 a.a. |
| Coordinates | 3657202..3657975 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf3447 | 3652667..3653617 | - | 951 | ORF3447 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3448 | 3653614..3654423 | - | 810 | ORF3448 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3449 | 3654690..3655898 | + | 1209 | ORF3449 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3450 | 3655873..3656352 | + | 480 | ORF3450 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3451 | 3656321..3657142 | - | 822 | ORF3451 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3452 | 3657202..3657975 | - | 774 | ORF3452 | Predicted ORF by PRODIGAL Version 1.20 | Toxin |
| orf3453 | 3657993..3658937 | - | 945 | ORF3453 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3454 | 3658939..3660603 | - | 1665 | ORF3454 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3455 | 3660794..3661627 | + | 834 | ORF3455 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3456 | 3661695..3662786 | + | 1092 | ORF3456 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Toxin
No domain identified.
Sequences
Orphan Toxin
Download Length: Molecular weight: 28606.03 Da Isoelectric Point: 8.5007
>ORF3452 Orphan_TA_82 Toxin
MSYQPQTEAATSRFLNVEEAGKTLRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDP
LVEAGYRVILLDCPGWGKSDSVVNSGSRSDLNARILKSVVDQLDIAKIHLLGNSMGGHSS
VAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFD
TSDLTDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDR
FVLMNPLMIFIKIIKLR
MSYQPQTEAATSRFLNVEEAGKTLRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDP
LVEAGYRVILLDCPGWGKSDSVVNSGSRSDLNARILKSVVDQLDIAKIHLLGNSMGGHSS
VAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFD
TSDLTDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDR
FVLMNPLMIFIKIIKLR
Download Length: 774 bp
>ORF3452 Orphan_TA_82 Toxin
CTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGCACAAAGCGGTC
GTTGCGCCCCCAGACAATCAGGGTTTGCGCTTTGATTTCCGCCAGACGTGGGCCAAAATC
CGGGAACTGTTTCGGATTAGCTTCCAGGCTCTTAACGAAGTTTTCCAGGTGATCGCGGCG
CGACAGCATATTATTCAGGCGCGCTTCAAACAGGGCGTCGGTCAAATCGCTGGTATCAAA
AACGAAGATATCCATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATT
CAGTCGCTTAATACCTTCGGTTGGCATCGGCGTAAACAAACTCATGCCGCCCGTACCGCC
GCCCATCAGCACCAGTTTGCCGACGCGCTCCGGCCATTTAAGGGTGAACGCCACAGAACT
ATGGCCCCCCATCGAGTTGCCCAGCAGGTGGATTTTGGCGATATCCAGTTGATCCACCAC
GCTTTTCAGGATTCGTGCATTAAGATCCGATCGCGAACCACTATTAACGACCGAATCGCT
CTTGCCCCAACCCGGACAATCCAGCAGGATCACCCGATAGCCCGCCTCTACCAGCGGATC
GATATTGCGGCTGAAGTTCGCCCAGCCAGTAGCACCCGGGCCGGAACCATGCAGCAGGAC
AACGGTTTCGTCGCCTTGTCCGCAGTCATTAAAATGGATGCGCAGCGTTTTACCCGCTTC
TTCTACATTCAGAAAACGGCTGGTGGCGGCTTCGGTTTGTGGCTGATAACTCAT
CTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGCACAAAGCGGTC
GTTGCGCCCCCAGACAATCAGGGTTTGCGCTTTGATTTCCGCCAGACGTGGGCCAAAATC
CGGGAACTGTTTCGGATTAGCTTCCAGGCTCTTAACGAAGTTTTCCAGGTGATCGCGGCG
CGACAGCATATTATTCAGGCGCGCTTCAAACAGGGCGTCGGTCAAATCGCTGGTATCAAA
AACGAAGATATCCATCATCAGCTTCAGGTTTTCGATAGTCGGCTGACGATAAAGCTGATT
CAGTCGCTTAATACCTTCGGTTGGCATCGGCGTAAACAAACTCATGCCGCCCGTACCGCC
GCCCATCAGCACCAGTTTGCCGACGCGCTCCGGCCATTTAAGGGTGAACGCCACAGAACT
ATGGCCCCCCATCGAGTTGCCCAGCAGGTGGATTTTGGCGATATCCAGTTGATCCACCAC
GCTTTTCAGGATTCGTGCATTAAGATCCGATCGCGAACCACTATTAACGACCGAATCGCT
CTTGCCCCAACCCGGACAATCCAGCAGGATCACCCGATAGCCCGCCTCTACCAGCGGATC
GATATTGCGGCTGAAGTTCGCCCAGCCAGTAGCACCCGGGCCGGAACCATGCAGCAGGAC
AACGGTTTCGTCGCCTTGTCCGCAGTCATTAAAATGGATGCGCAGCGTTTTACCCGCTTC
TTCTACATTCAGAAAACGGCTGGTGGCGGCTTCGGTTTGTGGCTGATAACTCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| T10093 | Burkholderia pseudomallei K96243 |
36.937 |
36.634 |
0.16 |