TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Orphan Toxin (Protein)
| Predicted family | Rhs (T10105) | Predicted domain | - |
| Locus tag | orf3300 | Length | 236 a.a. |
| Coordinates | 3495816..3496526 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf3293 | 3491541..3492023 | - | 483 | ORF3293 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3294 | 3492253..3493179 | + | 927 | ORF3294 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3295 | 3493248..3494342 | + | 1095 | ORF3295 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3296 | 3494458..3494829 | + | 372 | ORF3296 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3297 | 3495344..3495835 | - | 492 | ORF3297 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3298 | 3495816..3496526 | - | 711 | ORF3298 | Predicted ORF by PRODIGAL Version 1.20 | Toxin |
| orf3299 | 3496526..3496894 | - | 369 | ORF3299 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf3300 | 3496934..3501223 | - | 4290 | ORF3300 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Toxin
No domain identified.
Sequences
Orphan Toxin
Download Length: Molecular weight: 27060.41 Da Isoelectric Point: 6.0818
>ORF3298 Orphan_TA_78 Toxin
MLALMDADGNIAWSGEYDEWGNQLNEENPHHLHQPYRLPGQQYDKESGLYYNRNRYYDPL
QGRYITQDPIGLEGGWSLYAYPLNPVNGIDPLGLSPADVALMRKKEQLNHQRAWDILSDT
YDDMKRLNLGGTDQFFHCMAFCRVSKLNDAGVSRSAKGLGYEKEIRDYGLNMFGMYGRKV
KLSHSEMIEDNKKDLAVNEHGLTCPLTQDCSNRCIDYINPEHKKTIKALQDAGYLK
MLALMDADGNIAWSGEYDEWGNQLNEENPHHLHQPYRLPGQQYDKESGLYYNRNRYYDPL
QGRYITQDPIGLEGGWSLYAYPLNPVNGIDPLGLSPADVALMRKKEQLNHQRAWDILSDT
YDDMKRLNLGGTDQFFHCMAFCRVSKLNDAGVSRSAKGLGYEKEIRDYGLNMFGMYGRKV
KLSHSEMIEDNKKDLAVNEHGLTCPLTQDCSNRCIDYINPEHKKTIKALQDAGYLK
Download Length: 711 bp
>ORF3298 Orphan_TA_78 Toxin
TTACTTGAGATAGCCAGCATCTTGTAAAGCCTTTATCGTTTTTTTATGCTCTGGATTAAT
ATAATCAATACATCTATTTGAGCAATCTTGTGTTAATGGACATGTCAACCCATGTTCATT
TACAGCCAAGTCTTTTTTATTATCTTCAATCATCTCAGAATGGGATAACTTTACTTTTCT
GCCGTACATACCGAACATATTTAACCCGTAATCTCTAATCTCTTTTTCATAACCCAGCCC
TTTCGCTGATCGGCTAACACCAGCGTCATTTAATTTAGACACTCGACAAAATGCCATACA
ATGGAAAAATTGATCAGTCCCACCTAAATTTAATCTCTTCATATCATCATAAGTATCAGA
TAATATATCCCATGCTCTTTGATGGTTTAGTTGTTCTTTTTTTCGCATTAACGCTACATC
TGCAGGACTTAACCCTAATGGATCAATACCATTCACCGGATTCAGCGGATACGCATACAG
ACTCCATCCCCCCTCCAGCCCTATCGGGTCCTGAGTGATATACCGCCCCTGCAACGGATC
GTAGTACCGGTTCCGGTTGTAGTACAGCCCCGACTCCTTATCATACTGCTGCCCCGGCAG
CCGGTACGGCTGGTGCAGGTGATGCGGGTTCTCTTCATTCAGCTGGTTGCCCCACTCATC
ATACTCCCCGCTCCACGCAATGTTTCCATCCGCATCCATCAGCGCCAGCAT
TTACTTGAGATAGCCAGCATCTTGTAAAGCCTTTATCGTTTTTTTATGCTCTGGATTAAT
ATAATCAATACATCTATTTGAGCAATCTTGTGTTAATGGACATGTCAACCCATGTTCATT
TACAGCCAAGTCTTTTTTATTATCTTCAATCATCTCAGAATGGGATAACTTTACTTTTCT
GCCGTACATACCGAACATATTTAACCCGTAATCTCTAATCTCTTTTTCATAACCCAGCCC
TTTCGCTGATCGGCTAACACCAGCGTCATTTAATTTAGACACTCGACAAAATGCCATACA
ATGGAAAAATTGATCAGTCCCACCTAAATTTAATCTCTTCATATCATCATAAGTATCAGA
TAATATATCCCATGCTCTTTGATGGTTTAGTTGTTCTTTTTTTCGCATTAACGCTACATC
TGCAGGACTTAACCCTAATGGATCAATACCATTCACCGGATTCAGCGGATACGCATACAG
ACTCCATCCCCCCTCCAGCCCTATCGGGTCCTGAGTGATATACCGCCCCTGCAACGGATC
GTAGTACCGGTTCCGGTTGTAGTACAGCCCCGACTCCTTATCATACTGCTGCCCCGGCAG
CCGGTACGGCTGGTGCAGGTGATGCGGGTTCTCTTCATTCAGCTGGTTGCCCCACTCATC
ATACTCCCCGCTCCACGCAATGTTTCCATCCGCATCCATCAGCGCCAGCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| T10105 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
49.451 |
6.672 |
0.191 |