TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Orphan Toxin (Protein)
| Predicted family | vapC (T82) | Predicted domain | - |
| Locus tag | orf2397 | Length | 108 a.a. |
| Coordinates | 2538065..2538391 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf2390 | 2535253..2536752 | - | 1500 | ORF2390 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2391 | 2536988..2537893 | + | 906 | ORF2391 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2392 | 2538065..2538391 | - | 327 | ORF2392 | Predicted ORF by PRODIGAL Version 1.20 | Toxin |
| orf2393 | 2538399..2538584 | - | 186 | ORF2393 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2394 | 2538581..2541220 | - | 2640 | ORF2394 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2395 | 2541428..2542417 | + | 990 | ORF2395 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2396 | 2542528..2542950 | + | 423 | ORF2396 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf2397 | 2542947..2543213 | - | 267 | ORF2397 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Toxin
No domain identified.
Sequences
Orphan Toxin
Download Length: Molecular weight: 11907.81 Da Isoelectric Point: 9.9508
>ORF2392 Orphan_TA_53 Toxin
MKKTLLLCAFLVGLVSSNVMALTLDEARTQGRVGETFYGYLVALKTDAETEKLVTDINAE
RKASYQQLAKQNNVSVDDIAKLAGQKLVARAKPGEYVQGINGKWVRKF
MKKTLLLCAFLVGLVSSNVMALTLDEARTQGRVGETFYGYLVALKTDAETEKLVTDINAE
RKASYQQLAKQNNVSVDDIAKLAGQKLVARAKPGEYVQGINGKWVRKF
Download Length: 327 bp
>ORF2392 Orphan_TA_53 Toxin
TTAAAATTTTCGCACCCATTTACCGTTTATCCCTTGTACATATTCCCCCGGTTTGGCCCG
AGCTACGAGCTTTTGCCCGGCGAGTTTCGCGATATCATCTACAGACACATTATTTTGCTT
TGCCAGTTGTTGGTAACTCGCTTTACGTTCGGCATTAATGTCGGTTACTAATTTCTCTGT
TTCAGCATCCGTTTTCAGCGCAACCAGATAACCATAAAATGTTTCACCTACCCGCCCCTG
AGTTCTGGCTTCATCCAGAGTCAATGCCATTACATTGCTGCTTACCAGCCCAACAAGAAA
CGCACAAAGAAGTAATGTTTTCTTCAT
TTAAAATTTTCGCACCCATTTACCGTTTATCCCTTGTACATATTCCCCCGGTTTGGCCCG
AGCTACGAGCTTTTGCCCGGCGAGTTTCGCGATATCATCTACAGACACATTATTTTGCTT
TGCCAGTTGTTGGTAACTCGCTTTACGTTCGGCATTAATGTCGGTTACTAATTTCTCTGT
TTCAGCATCCGTTTTCAGCGCAACCAGATAACCATAAAATGTTTCACCTACCCGCCCCTG
AGTTCTGGCTTCATCCAGAGTCAATGCCATTACATTGCTGCTTACCAGCCCAACAAGAAA
CGCACAAAGAAGTAATGTTTTCTTCAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| T82 | Mycobacterium tuberculosis H37Rv |
30 |
66.667 |
0.25 |