TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Orphan Toxin (Protein)
| Predicted family | vagD (T6111) | Predicted domain | - |
| Locus tag | orf1008 | Length | 236 a.a. |
| Coordinates | 1074172..1074882 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf998 | 1070333..1071241 | + | 909 | ORF998 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf999 | 1071243..1072670 | + | 1428 | ORF999 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1000 | 1072670..1073275 | + | 606 | ORF1000 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1001 | 1073325..1073648 | + | 324 | ORF1001 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1002 | 1073842..1074153 | + | 312 | ORF1002 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1003 | 1074172..1074882 | + | 711 | ORF1003 | Predicted ORF by PRODIGAL Version 1.20 | Toxin |
| orf1004 | 1074882..1075361 | + | 480 | ORF1004 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1005 | 1075358..1076407 | + | 1050 | ORF1005 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1006 | 1076388..1077149 | + | 762 | ORF1006 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1007 | 1077143..1077769 | + | 627 | ORF1007 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf1008 | 1077909..1079048 | + | 1140 | ORF1008 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Toxin
No domain identified.
Sequences
Orphan Toxin
Download Length: Molecular weight: 25737.26 Da Isoelectric Point: 6.6284
>ORF1003 Orphan_TA_19 Toxin
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISP
GDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARL
LALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTR
ALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISP
GDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARL
LALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTR
ALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
Download Length: 711 bp
>ORF1003 Orphan_TA_19 Toxin
ATGGCAACCACTCATTTGGATGTTTGCGCCGTGGTTCCGGCGGCCGGATTTGGCCGTCGA
ATGCAAACGGAATGTCCTAAGCAATATCTCTCAATCGGTAATCAAACCATTCTTGAACAC
TCGGTGCATGCGCTGCTGGCGCATCCCCGGGTGAAACGTGTCGTCATTGCCATAAGTCCT
GGCGATAGCCGTTTTGCACAACTTCCTCTGGCGAATCATCCGCAAATCACCGTTGTAGAT
GGCGGTGATGAGCGTGCCGATTCCGTGCTGGCAGGTTTGAAAGCCGCTGGCGACGCGCAG
TGGGTATTGGTGCATGACGCCGCTCGTCCTTGTCTGCATCAGGATGACCTCGCGCGATTG
TTGGCGTTGAGCGAAACCAGCCGCACGGGAGGGATCCTAGCCGCACCAGTGCGCGATACG
ATGAAACGTGCCGAACCGGGCAAAAATGCCATTGCTCATACCGTTGATCGCAACGGCTTA
TGGCACGCGCTGACGCCGCAATTTTTCCCTCGTGAGCTGTTACATGACTGTCTGACGCGC
GCTCTAAATGAAGGCGCGACTATTACCGACGAAGCCTCGGCGCTGGAATATTGCGGATTC
CATCCTCAGTTGGTCGAAGGCCGTGCGGATAACATTAAAGTCACGCGCCCGGAAGATTTG
GCACTGGCCGAGTTTTACCTCACCCGAACCATCCATCAGGAGAATACATAA
ATGGCAACCACTCATTTGGATGTTTGCGCCGTGGTTCCGGCGGCCGGATTTGGCCGTCGA
ATGCAAACGGAATGTCCTAAGCAATATCTCTCAATCGGTAATCAAACCATTCTTGAACAC
TCGGTGCATGCGCTGCTGGCGCATCCCCGGGTGAAACGTGTCGTCATTGCCATAAGTCCT
GGCGATAGCCGTTTTGCACAACTTCCTCTGGCGAATCATCCGCAAATCACCGTTGTAGAT
GGCGGTGATGAGCGTGCCGATTCCGTGCTGGCAGGTTTGAAAGCCGCTGGCGACGCGCAG
TGGGTATTGGTGCATGACGCCGCTCGTCCTTGTCTGCATCAGGATGACCTCGCGCGATTG
TTGGCGTTGAGCGAAACCAGCCGCACGGGAGGGATCCTAGCCGCACCAGTGCGCGATACG
ATGAAACGTGCCGAACCGGGCAAAAATGCCATTGCTCATACCGTTGATCGCAACGGCTTA
TGGCACGCGCTGACGCCGCAATTTTTCCCTCGTGAGCTGTTACATGACTGTCTGACGCGC
GCTCTAAATGAAGGCGCGACTATTACCGACGAAGCCTCGGCGCTGGAATATTGCGGATTC
CATCCTCAGTTGGTCGAAGGCCGTGCGGATAACATTAAAGTCACGCGCCCGGAAGATTTG
GCACTGGCCGAGTTTTACCTCACCCGAACCATCCATCAGGAGAATACATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| T6111 | uncultured bacterium |
36.364 |
49.624 |
0.102 |