TAfinder detailed results
Overview
| Job ID | wrVbGpMxFf | ||
| Sequence name | NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome | ||
| Predicted type | II | ||
Orphan Antitoxin (Protein)
| Predicted family | vapB (AT6245) | Predicted domain | PF00440 (TetR_N) |
| Locus tag | orf4250 | Length | 234 a.a. |
| Coordinates | 4550376..4551080 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| orf4243 | 4545862..4546719 | - | 858 | ORF4243 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf4244 | 4546664..4548508 | - | 1845 | ORF4244 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf4245 | 4548877..4549977 | + | 1101 | ORF4245 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf4246 | 4550017..4550376 | - | 360 | ORF4246 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf4247 | 4550376..4551080 | - | 705 | ORF4247 | Predicted ORF by PRODIGAL Version 1.20 | Antitoxin |
| orf4248 | 4551357..4552757 | + | 1401 | ORF4248 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf4249 | 4552740..4553657 | - | 918 | ORF4249 | Predicted ORF by PRODIGAL Version 1.20 | - |
| orf4250 | 4553924..4555297 | - | 1374 | ORF4250 | Predicted ORF by PRODIGAL Version 1.20 | - |
Domains
The domains were predicted by HMMER and were sorted by score.
Orphan Antitoxin
No domain identified.
Sequences
Orphan Antitoxin
Download Length: Molecular weight: 26553.33 Da Isoelectric Point: 9.2858
>ORF4247 Orphan_TA_103 Antitoxin
MFILWYSASSTFGKDSDIVMGVRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREA
GIAPTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGN
NPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVTIV
FSAGAEALDVGVEQRRQLEERLVLQLRMISKGAYYWYRREQEKTAIIPGNVKDE
MFILWYSASSTFGKDSDIVMGVRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREA
GIAPTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGN
NPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVTIV
FSAGAEALDVGVEQRRQLEERLVLQLRMISKGAYYWYRREQEKTAIIPGNVKDE
Download Length: 705 bp
>ORF4247 Orphan_TA_103 Antitoxin
TTACTCGTCCTTCACATTTCCCGGAATAATTGCGGTTTTCTCTTGTTCACGGCGATACCA
GTAATAAGCCCCTTTCGAAATCATTCGCAGTTGCAGTACCAGTCGCTCTTCTAATTGCCG
ACGTTGTTCGACGCCGACGTCCAACGCCTCGGCACCCGCACTGAAGACAATTGTCACCAT
TGCTTCGGCTTGCGCTTCAGTAAACGCACGCGGCATATGGTTTTCGAGTTCCAGATAGTC
CGCAAGTTCCGCAATGAAGTGCTGAATTTCACGCGCAACGGCGGCACGAAACGCAGCGGA
GGTGCCGGAGCGTTCCCGCAATAATAACCGGAAGGCGTTAGGATTATTACCGATGAACTC
CATAAATGTGGAGACCGAGGTGCGGATCACACTCCCGCCTTTGGCGATACGCTGACGCGC
CTGGCGCATGAGTTGGCGTAGCATTAAACCGCTCTCATCAACCATGGTCAGACCCAGTTC
GTCTACGTCGCGGAAATGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCAC
TTCACGCAAACTCAGGCTGGCGAAGCTGCGTTCAGCACTTAATTGGCTAAATGCGGCTTC
CACCAGCGAACGGCGGGTTTTTTCTTTTTGTTGCGCTCTTACGCCCATCACGATGTCTGA
ATCCTTGCCAAAAGTACTGCTGGCACTATACCAGAGAATGAACAT
TTACTCGTCCTTCACATTTCCCGGAATAATTGCGGTTTTCTCTTGTTCACGGCGATACCA
GTAATAAGCCCCTTTCGAAATCATTCGCAGTTGCAGTACCAGTCGCTCTTCTAATTGCCG
ACGTTGTTCGACGCCGACGTCCAACGCCTCGGCACCCGCACTGAAGACAATTGTCACCAT
TGCTTCGGCTTGCGCTTCAGTAAACGCACGCGGCATATGGTTTTCGAGTTCCAGATAGTC
CGCAAGTTCCGCAATGAAGTGCTGAATTTCACGCGCAACGGCGGCACGAAACGCAGCGGA
GGTGCCGGAGCGTTCCCGCAATAATAACCGGAAGGCGTTAGGATTATTACCGATGAACTC
CATAAATGTGGAGACCGAGGTGCGGATCACACTCCCGCCTTTGGCGATACGCTGACGCGC
CTGGCGCATGAGTTGGCGTAGCATTAAACCGCTCTCATCAACCATGGTCAGACCCAGTTC
GTCTACGTCGCGGAAATGCCGATAAAAAGAGGTGGGAGCAATGCCCGCTTCACGCGCCAC
TTCACGCAAACTCAGGCTGGCGAAGCTGCGTTCAGCACTTAATTGGCTAAATGCGGCTTC
CACCAGCGAACGGCGGGTTTTTTCTTTTTGTTGCGCTCTTACGCCCATCACGATGTCTGA
ATCCTTGCCAAAAGTACTGCTGGCACTATACCAGAGAATGAACAT
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| AT6245 | Mycobacterium tuberculosis H37Rv |
30.357 |
13.793 |
0.073 |