TAfinder detailed results

Overview

Job ID 9mizKMmBqU
Sequence name Escherichia coli strain DH5alpha chromosome, complete genome.
Predicted type II

Toxin (Protein)


Predicted family Hha (T10152) Predicted domain -
Locus tag C1467_RS18445 Length 72 a.a.
Coordinates 3543973..3544191 (+)

Antitoxin (Protein)


Predicted family TomB (AT10152) Predicted domain -
Locus tag C1467_RS18440 Length 124 a.a.
Coordinates 3543573..3543947 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1467_RS18430 3538662..3539855 + 1194 WP_001295324.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
C1467_RS18435 3539878..3543027 + 3150 WP_001132469.1 efflux RND transporter permease AcrB -
C1467_RS18440 3543573..3543947 + 375 WP_000344800.1 Hha toxicity modulator TomB Antitoxin
C1467_RS18445 3543973..3544191 + 219 WP_001291435.1 HHA domain-containing protein Toxin
C1467_RS18450 3544363..3544914 + 552 WP_000102564.1 maltose O-acetyltransferase -
C1467_RS18455 3545030..3545500 + 471 WP_000136192.1 YlaC family protein -
C1467_RS18460 3545664..3547214 + 1551 WP_001299455.1 cyclic-guanylate-specific phosphodiesterase PdeB -
C1467_RS18465 3547256..3547609 - 354 WP_000878140.1 DUF1428 domain-containing protein -
C1467_RS18475 3547988..3548299 + 312 WP_000409911.1 MGMT family protein -
C1467_RS18480 3548330..3548902 - 573 WP_000779826.1 YbaY family lipoprotein -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin


No domain identified.


Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 72 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>WP_001291435.1 TA_27 Toxin
MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLY
DKIPSSVWKFIR*

Download         Length: 219 bp

>WP_001291435.1 TA_27 Toxin
ATGTCCGAAAAACCTTTAACGAAAACCGATTATTTAATGCGTTTACGTCGTTGCCAGACA
ATTGACACGCTGGAGCGTGTTATCGAGAAAAATAAATACGAATTATCAGATAATGAACTG
GCGGTATTTTACTCAGCCGCAGATCACCGCCTCGCCGAATTGACCATGAATAAACTGTAC
GACAAGATCCCTTCCTCAGTATGGAAATTTATTCGCTAA

Antitoxin


Download         Length: 124 a.a.        Molecular weight: 14557.39 Da        Isoelectric Point: 4.7395

>WP_000344800.1 TA_27 Antitoxin
MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFAL
NYKIKYNEDNKLIEQIDEYLDDTFMLFSSYGINMQDLQKWRKSGNRLFRCFVNATKENPA
SLSC*

Download         Length: 375 bp

>WP_000344800.1 TA_27 Antitoxin
ATGGATGAATACTCACCCAAAAGACATGATATCGCACAGCTTAAGTTTCTCTGTGAAACC
CTGTATCATGACTGCCTTGCAAACCTTGAAGAAAGCAATCATGGCTGGGTTAACGACCCA
ACCTCGGCGATCAACCTCCAGTTGAATGAACTGATTGAGCATATTGCGACCTTCGCACTT
AATTACAAAATTAAGTATAATGAAGACAATAAGCTCATTGAGCAGATCGACGAATATCTG
GATGACACCTTTATGTTGTTCAGTAGTTATGGTATTAATATGCAGGATCTTCAGAAATGG
CGGAAGTCAGGTAATCGACTATTCCGTTGTTTTGTCAATGCGACGAAAGAGAATCCTGCG
AGTTTATCTTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.